Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35970 1415 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03270 349 / 4e-108 DNA-binding protein, putative (.1) AT5G47010 201 / 8e-53 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT4G15570 154 / 2e-38 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08840 148 / 6e-36 EMB2411 embryo defective 2411, DNA replication helicase, putative (.1.2) AT1G05460 130 / 1e-30 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 123 / 3e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 119 / 4e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G30100 116 / 4e-26 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 110 / 1e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G054600 [exp] 334 / 2e-102 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.001G148100 [exp] 200 / 3e-52 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.003G086400 [exp] 198 / 7e-52 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.017G056700 [exp] 149 / 1e-36 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G180200 [exp] 142 / 3e-34 AT1G08840 1528 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Potri.008G155400 [exp] 125 / 4e-29 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G143000 [exp] 126 / 6e-29 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 125 / 7e-29 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 124 / 3e-28 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024527 [exp] 1382 / 0 AT5G35970 1343 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024974 [exp] 853 / 0 AT5G35970 825 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024975 [exp] 532 / 0 AT5G35970 524 / 9e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026309 [exp] 341 / 1e-104 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10042360 [exp] 251 / 5e-73 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1) Lus10011054 [exp] 205 / 6e-54 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10003024 [exp] 205 / 9e-54 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10010991 [exp] 139 / 5e-33 AT1G08840 1394 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Lus10015030 [exp] 132 / 3e-31 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 131 / 8e-31 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13604 [poplar] [flax] AAA_30 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.013G073900.2 pacid=42812320 polypeptide=Potri.013G073900.2.p locus=Potri.013G073900 ID=Potri.013G073900.2.v4.1 annot-version=v4.1 ATGGAAACGAGCAGCTTTTTATTGAAGCAGCTTCCAAGTGGGAATTGCTTGAGCCTACCTCGGCTTCCTCGTTATGTAGCCATTTCTTCTCCACAATTCC TTACTCATAAATCCCATTTCCATTCTGTTTCAACATTCCAACAATCACTTACCATTTGGAACAGCAGCAGTAATGGTTCTACGAAGCCCAGAACCCCAAC AAAAAAGAGAAGATCGCTCAATAGAAGCAAAAGCAGCAGCAGCAGCAATAGCACATTTATTGATATCACTAAACCATATACAACAGGTTCTTGTGGTATC AGTACTAGTAATATCCATGCTCCTGCGCCTGCTTCTGCTAAGCAAGTTGTGGTGGAAAAGCAAGAAAAGAAAATGAGTGTGTGCACGCTTAAGGAGAATG GAGACCCACTGGGGCGTAAAGATCTTGGAAAGAGTGTCGTGAAATGGATTTCTCAGGCAATGAGAGCAATGGCTAGAGAGTTTGCTTCAGCCGAGGCGCA AGGGGAGTTTACGGAATTGAGACAGAGAATGGGGCCTGGCTTGACATTTGTTATACAAGCACAGCCTTACCTTAATGCTGTTCCTATGCCTCTCGGTCTC GAAGCTATTTGCTTGAAGGCCTGCACTCATTATCCCACGCTATTTGATCATTTCCAGAGAGAATTGAGGGAGGTTCTTCAAGACTTGAAGCGTAAAGGGT TGGTTCAAGATTGGCAAAAGACTGAGTCTTGGAAGTTGCTCAAGGAGCTTGCCAATTCAGCTCAGCATAGAGCAATTGCGAGGAAGGCTACTCAATCAAA GCCTCTCCAAGGGGTTTTAGGGATGAACTTGGAGAAGGCTAAGGCTATACAGGGCAGAATTAATGAGTTCACAAATCAAATGTCTGAATTGCTTCGTATA GAGAGGGATGCTGAATTGGAGTTTACGCAAGAAGAACTGAATGCCGTTCCTACACTTGATGAAAGTTCTGATTCATCTAAACCCATTGAATTCTTGGTTA GCCATGGCCAGGGTCAGCAAGAGCTCTGTGACACCATCTGCAACTTGTATGCTGTCAGCACATCTACAGGATTAGGAGGAATGCACTTGGTACTGTTTCG AGTTGAAGGAAATCATCGATTGCCTCCTACAACCCTTTCGCCAGGAGATATGGTTTGTGTGAGAATATGTGATAGCAGGGGTGCCGGTGCAACTTCTAGT TTACAGGGATTTGTGAACAACCTTGGGGAAGATGGCTGCAGCATCAGTGTGGCTTTAGAATCTCGTCATGGTGATCCTACCTTCTCTAAGCTCTCTGGCA AGAGTGTGCGCATTGATCGTATTCATGGATTGGCTGATGCTGTCACATATGAGCGCAATTGTGAGGCCCTGATGCTGCTTCAGAAGAAGGGTCTGCACAA GAAAAATCCTTCAATTGCTGTTGTGGCTACATTATTTGGTGATAAGGAAGATGTTGCTTGGTTGGAGGAGAATGATTTGGCAAGTTGGGATGAAGCAGAC TTTGATGAACATTTGGGGAAACCTTTTGATGATTCCCAGCGAAGAGCAATTACCCTGGGGTTGAACAAGAAACGACCATTTTTGATAATCCAGGGGCCTC CTGGTACTGGGAAGTCAGGCTTGCTTAAGGAACTTATTGCACTTGCTGTTGGGAAAGGTGAAAGGGTGCTGGTGACAGCACCTACGAATGCAGCTGTTGA CAATATGGTTGAGAAGCTATCAAATATTGGGTTGAACATTGTGCGGGTTGGTAATCCAGCACGTATTTCTTCAGCAGTTGCATCAAAGTCTCTGGGTGAT ATAGTGAATTCTAAGCTTGCAGCATTCCGAACAGAGTTTGAAAGAAAGAAGTCTGATTTAAGAAAAGACCTGAGTCATTGTCTAAAGGATGATTCTTTAG CTGCTGGTATACGCCAGCTTTTGAAACAGCTTGGAAAGACGCTGAAGAAAAAGGAGAAAGAGACTGTGAGGGAGGTGCTCTCGAGTGCACAGGTAGTGCT TGCCACTAACACTGGAGCAGCGGATCCATTGATTCGAAGGCTGGATGCTTTTGACCTGGTTGTTATGGATGAAGCAGGGCAGGCAATTGAACCTTCTTGC TGGATTCCTATATTGCAGGGCAAACGTTGTATTCTTGCTGGGGATCAATGCCAACTTGCACCAGTGATCCTATCCAGAAAAGCCTTGGAGGGCGGCCTTG GAGTCTCTCTCTTGGAAAGAGCTTCCACTTTGCATGAAGGGGTCCTTGCAACCAAGTTAACAACACAATATCGTATGAATGATGCAATTGCCAGTTGGGC CTCAAAGGAGATGTATAGTGGATTACTGAAGTCGTCTTCCACTGTCGCTTCACATCTTCTTGTAGATACTCCATTTGTTAAGCCCACTTGGATCACACAA TGCCCATTGCTGTTGCTTGATACAAGAATGCCATATGGAAGTTTGTCAGTGGGCTGTGAGGAGCATTTAGACCCAGCTGGAACAGGCTCATTTTATAATG AAGGCGAAGCAGATATTGTTGTGCAGCATGTGTCCTCTTTAATTTTTTCAGGTGTTAGACCAACAGCTATTGCGGTGCAATCACCATATGTTGCTCAGGT ACAACTCTTGAGGGAGAGGCTAGATGAACTTCCAGAGGCGGATGGTGTAGAGATTGCAACTATTGATAGCTTTCAAGGCCGAGAGGCTGATGCAGTAATT ATATCAATGGTCCGCTCAAACACCTTAGGAGCTGTTGGATTCCTGGGGGATAGCAAGCGAACGAATGTTGCCATTACAAGGGCGCGCAAACACGTAGCAG TTGTCTGTGATAGCTCAACAATATGTCATAACACCTTCCTAGCCAGGCTATTGCGTCACATCCGCTATTTTGGCAGGGTTAAGCATGCCGAGCCTGGTAG TTTTGGGGGATCTGGATTTGACATGAACCCAATGTTGCCATCGATTAGCTAA
AA sequence Show only first row Show all	>Potri.013G073900.2 pacid=42812320 polypeptide=Potri.013G073900.2.p locus=Potri.013G073900 ID=Potri.013G073900.2.v4.1 annot-version=v4.1 METSSFLLKQLPSGNCLSLPRLPRYVAISSPQFLTHKSHFHSVSTFQQSLTIWNSSSNGSTKPRTPTKKRRSLNRSKSSSSSNSTFIDITKPYTTGSCGI STSNIHAPAPASAKQVVVEKQEKKMSVCTLKENGDPLGRKDLGKSVVKWISQAMRAMAREFASAEAQGEFTELRQRMGPGLTFVIQAQPYLNAVPMPLGL EAICLKACTHYPTLFDHFQRELREVLQDLKRKGLVQDWQKTESWKLLKELANSAQHRAIARKATQSKPLQGVLGMNLEKAKAIQGRINEFTNQMSELLRI ERDAELEFTQEELNAVPTLDESSDSSKPIEFLVSHGQGQQELCDTICNLYAVSTSTGLGGMHLVLFRVEGNHRLPPTTLSPGDMVCVRICDSRGAGATSS LQGFVNNLGEDGCSISVALESRHGDPTFSKLSGKSVRIDRIHGLADAVTYERNCEALMLLQKKGLHKKNPSIAVVATLFGDKEDVAWLEENDLASWDEAD FDEHLGKPFDDSQRRAITLGLNKKRPFLIIQGPPGTGKSGLLKELIALAVGKGERVLVTAPTNAAVDNMVEKLSNIGLNIVRVGNPARISSAVASKSLGD IVNSKLAAFRTEFERKKSDLRKDLSHCLKDDSLAAGIRQLLKQLGKTLKKKEKETVREVLSSAQVVLATNTGAADPLIRRLDAFDLVVMDEAGQAIEPSC WIPILQGKRCILAGDQCQLAPVILSRKALEGGLGVSLLERASTLHEGVLATKLTTQYRMNDAIASWASKEMYSGLLKSSSTVASHLLVDTPFVKPTWITQ CPLLLLDTRMPYGSLSVGCEEHLDPAGTGSFYNEGEADIVVQHVSSLIFSGVRPTAIAVQSPYVAQVQLLRERLDELPEADGVEIATIDSFQGREADAVI ISMVRSNTLGAVGFLGDSKRTNVAITRARKHVAVVCDSSTICHNTFLARLLRHIRYFGRVKHAEPGSFGGSGFDMNPMLPSIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35970			P-loop containing nucleoside t...		Potri.013G073900 [exp]	0	1
AT5G19850			alpha/beta-Hydrolases superfam...		Potri.003G219700 [exp]	2.23	0.9649
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Potri.016G116400 [exp]	3.46	0.9606	Pt-PDX1.2
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Potri.006G062300 [exp]	3.87	0.9276
AT1G16720		HCF173	high chlorophyll fluorescence ...		Potri.014G000400 [exp]	4.12	0.9205
AT1G16720		HCF173	high chlorophyll fluorescence ...		Potri.007G003500 [exp]	4.47	0.9446
AT4G28740			unknown protein		Potri.014G194500 [exp]	4.69	0.9639
AT3G24190			Protein kinase superfamily pro...		Potri.001G050700 [exp]	4.89	0.9561
AT5G02540			NAD(P)-binding Rossmann-fold s...		Potri.006G083900 [exp]	6.00	0.9446
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Potri.006G199100 [exp]	6.32	0.9425	ELI3.1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.006G268500 [exp]	12.24	0.9074

Compare expression of checked genes

Potri.013G073900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.