Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17560 156 / 4e-49 BolA-like family protein (.1) AT1G55805 49 / 9e-08 BolA-like family protein (.1) AT4G26500 46 / 4e-06 SUFE1, EMB1374, CPSUFE, ATSUFE SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) AT5G09830 38 / 0.0005 BolA-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G036800 [exp] 48 / 1e-07 AT1G55805 130 / 6e-40 BolA-like family protein (.1) Potri.011G165400 [exp] 45 / 6e-06 AT4G26500 404 / 1e-140 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Potri.001G468300 [exp] 43 / 4e-05 AT4G26500 392 / 5e-136 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020347 [exp] 171 / 1e-54 AT5G17560 158 / 2e-49 BolA-like family protein (.1) Lus10009527 [exp] 169 / 7e-54 AT5G17560 145 / 2e-44 BolA-like family protein (.1) Lus10026101 [exp] 52 / 6e-09 AT4G26500 124 / 1e-37 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10002318 [exp] 51 / 9e-09 AT1G55805 119 / 2e-35 BolA-like family protein (.1) Lus10032905 [exp] 54 / 1e-08 AT4G26500 380 / 4e-131 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1) Lus10015605 [exp] 53 / 2e-08 AT4G26500 387 / 2e-133 SULFUR E 1, MBRYO DEFECTIVE 1374, ARABIDOPSIS THALIANA SULFUR E, chloroplast sulfur E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01722 [poplar] [flax] BolA BolA-like protein
Representative CDS sequence Show only first row Show all	>Potri.013G074100.2 pacid=42812686 polypeptide=Potri.013G074100.2.p locus=Potri.013G074100 ID=Potri.013G074100.2.v4.1 annot-version=v4.1 ATGGCAAAGAGCCACACCATCTTCATGTCGTGGCGCCCCTACTCTCTCCTTCGCCTAGCTCTCCCTTCATCTCTTCTCCACCTCCCAAAACCACACTCGG TCATTTTAAACAAGACTCAACCAAACTTGCTCTTCTCTTGCGCTAACAGAACCAAACTCCACTTTGAAACCCATGGCTTCGTTAAATTAGGGTTTGGTTC TGTCGGTAATCGCAGATTCAGTACTGAAGCTTCCCGTGATGTTAATGATGCTGGCTCCATTGACTCTCCTCTTATGAAGTCCATGGAGAACAAGATTAAG GAAGAACTAACTGCGGAATCAGTCTCTGTAAAAGATGCTTACGGTGATGGTCGACATGTCTGCATAGATGTTATCTCTGAAGCCTTCGAGGGACAGTCAG CCGTGAATAGGCAGAGGATGGTATACAAAGCCATCTGGGAGGAGCTTCAGAGCACTGTACACGCAGTTGATCAGATGACTACCCGAACCCCAACTGAAGC AGCTGCCCAGAAGTGA
AA sequence Show only first row Show all	>Potri.013G074100.2 pacid=42812686 polypeptide=Potri.013G074100.2.p locus=Potri.013G074100 ID=Potri.013G074100.2.v4.1 annot-version=v4.1 MAKSHTIFMSWRPYSLLRLALPSSLLHLPKPHSVILNKTQPNLLFSCANRTKLHFETHGFVKLGFGSVGNRRFSTEASRDVNDAGSIDSPLMKSMENKIK EELTAESVSVKDAYGDGRHVCIDVISEAFEGQSAVNRQRMVYKAIWEELQSTVHAVDQMTTRTPTEAAAQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17560			BolA-like family protein (.1)		Potri.013G074100 [exp]	0	1
AT2G24020			Uncharacterised BCR, YbaB fami...		Potri.018G105600 [exp]	5.09	0.9338
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Potri.010G065100 [exp]	6.78	0.9346
AT5G26880		AGL26	AGAMOUS-like 26 (.1.2)		Potri.009G064500 [exp]	14.28	0.8910
AT4G34620		SSR16	small subunit ribosomal protei...		Potri.013G128200 [exp]	22.11	0.9289
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Potri.005G062800 [exp]	29.74	0.8693
AT5G16660			unknown protein		Potri.013G078100 [exp]	30.90	0.9137
AT2G43090			Aconitase/3-isopropylmalate de...		Potri.003G107800 [exp]	35.32	0.8971
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Potri.001G300500 [exp]	35.35	0.9085
AT5G45680		ATFKBP13	FK506 BINDING PROTEIN 13, FK50...		Potri.001G075500 [exp]	40.55	0.9120
AT1G26740			Ribosomal L32p protein family ...		Potri.008G090100 [exp]	41.66	0.8923

Compare expression of checked genes

Potri.013G074100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.