Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	HCQL2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 496 / 3e-174 HXXXD-type acyl-transferase family protein (.1) AT3G03480 481 / 2e-168 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1.2) AT3G48720 228 / 5e-70 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G63560 222 / 8e-68 HXXXD-type acyl-transferase family protein (.1) AT1G27620 208 / 2e-62 HXXXD-type acyl-transferase family protein (.1) AT3G62160 180 / 9e-52 HXXXD-type acyl-transferase family protein (.1) AT5G07080 171 / 5e-48 HXXXD-type acyl-transferase family protein (.1) AT1G03390 168 / 6e-47 HXXXD-type acyl-transferase family protein (.1) AT5G48930 166 / 1e-46 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G074400 [exp] 849 / 0 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 738 / 0 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 733 / 0 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 576 / 0 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 573 / 0 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 497 / 6e-175 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 496 / 3e-174 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.001G447300 [exp] 487 / 8e-171 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 487 / 9e-171 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 608 / 0 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 513 / 1e-180 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 502 / 2e-177 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 481 / 2e-168 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 481 / 4e-168 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 457 / 3e-159 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 390 / 6e-135 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 349 / 2e-119 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10001027 [exp] 252 / 8e-81 AT5G17540 210 / 1e-64 HXXXD-type acyl-transferase family protein (.1) Lus10032554 [exp] 244 / 3e-76 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.013G074300.1 pacid=42812375 polypeptide=Potri.013G074300.1.p locus=Potri.013G074300 ID=Potri.013G074300.1.v4.1 annot-version=v4.1 ATGGCTTCATCACCCTCTTCTCTAGTTTTCAAAGTTCACAGACGTGAACCCGAGCTGATCAAACCAGCGAAGCCCACCCCACATGAGTTCAAGCTGTTAT CTGACATTGATGACCAAGAAGGCCTTCGATACCACATTCCATTCATACAATTTTATCGGCACAATCCCTCAGTGCAAGGGAAAGACCCCGTCAAGGTCAT CAGAGAGGCAATTGCTAAAACATTAGTGTTTTACTATCCATTTGCCGGCAGGCTGATGGCAGGGCATAACCGCAAGCTCATGGTGGAATGCACTGGCGAG GGTATCTTGTTTATAGAGGCTGACGCTGATGTTACACTTGAGCAGTTTGGTGATCCACTTCAACCTCCATTTCCTTGCTTGGAGGAGCTCCTCTTTGATG TTCCTGGCTCTAGCGGGGTGCTAAACTGCCCTCTGTTACTTATTCAGGTGTCACGGCTCAAGTGTGGTGGTTTTCTCTTTTCCCTCCGCCTCAACCATAC CATGAGTGACGGCCCAGGATTAGTGCAATTCATGGCAGCGGTGGGTGAGATGGCACGCGGAGCCAGCGCCCCCTCTGTCCCTCCAGTGTGGGAAAGACAT GTCCTTAATGCAACTGACCCACCTCGAGTTTCTTGCAGACACCGAGCGTACGAGGAGGTAGCTGGCTCCAAGAGCTCAATTCTTACACATGATCATCTGG TTCATCGTTCATTTTTCTTTAGCCCTTCAGATATAACTGCTCTTCGAAAATTGGTCCCACCTCACCTCGGCTATTGTTCTAGTTTCGAAATATTAACGGC ATGTCTTTGGATATGTCGTGCCATTGCCCTCCAACCAGATCCTAATGAAGAAATGCGCATAATTTGCCTCGTCAATGCTCGTGAAAAACTCAACCCTCCG TTATTACCAAGAGGTTACTATGGTAATGGTTTTGGTCTTCTAGCAGCAGTAGCAACTGCAGGGGAACTTTCGAAAAGGCCAATTGGATATGCTTTGGAGC TGGTAAAGAAGGCTAAGGCGGGCATGACTGAGGAATACATGCGATCTACAGCATCTTTGATGGTGAGCAAGGGAAGGCCTCTTTTTACTGTGCCAGGGAC CTACATAGTGTCGGACTTGAGACGTACGGGATTTGAAAAGGTAGATTTCGGATGGGGAAATGCTCTCTATGGCGGGACTGCAAAAGCCATCCCTGAACTT GCAAGCTTTTATATTCCGTTTACAAATAAGAAAGGAGAAGATGGGGTCGTAGTACAATTTTGCTTGCCAGCTCCTGCCATGGAAAGACTTTTCAAGGAGC TTGAAGGCATGCTAAAGGGCTGA
AA sequence Show only first row Show all	>Potri.013G074300.1 pacid=42812375 polypeptide=Potri.013G074300.1.p locus=Potri.013G074300 ID=Potri.013G074300.1.v4.1 annot-version=v4.1 MASSPSSLVFKVHRREPELIKPAKPTPHEFKLLSDIDDQEGLRYHIPFIQFYRHNPSVQGKDPVKVIREAIAKTLVFYYPFAGRLMAGHNRKLMVECTGE GILFIEADADVTLEQFGDPLQPPFPCLEELLFDVPGSSGVLNCPLLLIQVSRLKCGGFLFSLRLNHTMSDGPGLVQFMAAVGEMARGASAPSVPPVWERH VLNATDPPRVSCRHRAYEEVAGSKSSILTHDHLVHRSFFFSPSDITALRKLVPPHLGYCSSFEILTACLWICRAIALQPDPNEEMRIICLVNAREKLNPP LLPRGYYGNGFGLLAAVATAGELSKRPIGYALELVKKAKAGMTEEYMRSTASLMVSKGRPLFTVPGTYIVSDLRRTGFEKVDFGWGNALYGGTAKAIPEL ASFYIPFTNKKGEDGVVVQFCLPAPAMERLFKELEGMLKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G074300 [exp]	0	1	HCQL2
AT5G41761			unknown protein		Potri.003G136700 [exp]	2.64	0.9439
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Potri.005G246100 [exp]	6.92	0.9373	Pt-PETE.1
AT5G17870		PSRP6	plastid-specific 50S ribosomal...		Potri.002G112500 [exp]	7.87	0.9384
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Potri.017G125100 [exp]	12.00	0.9304
					Potri.013G093450 [exp]	15.81	0.9131
AT4G29400			Protein of unknown function (D...		Potri.014G148300 [exp]	17.60	0.9323
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Potri.007G128200 [exp]	18.54	0.9326	GUN4.2
AT1G03600		PSB27	photosystem II family protein ...		Potri.005G206200 [exp]	22.97	0.9317
AT3G04890			Uncharacterized conserved prot...		Potri.013G036500 [exp]	29.66	0.9213
AT1G49975			unknown protein		Potri.009G086400 [exp]	29.69	0.9321

Compare expression of checked genes

Potri.013G074300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.