Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 547 / 0 HXXXD-type acyl-transferase family protein (.1) AT3G03480 500 / 9e-176 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 267 / 1e-84 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1) AT3G48720 241 / 6e-75 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G27620 203 / 3e-60 HXXXD-type acyl-transferase family protein (.1) AT3G62160 188 / 1e-54 HXXXD-type acyl-transferase family protein (.1) AT5G57840 188 / 1e-54 HXXXD-type acyl-transferase family protein (.1) AT1G03390 181 / 1e-51 HXXXD-type acyl-transferase family protein (.1) AT1G28680 179 / 7e-51 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043600 [exp] 845 / 0 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 773 / 0 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074300 [exp] 746 / 0 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1) Potri.019G003000 [exp] 632 / 0 AT5G17540 480 / 9e-168 HXXXD-type acyl-transferase family protein (.1) Potri.019G002900 [exp] 630 / 0 AT5G17540 481 / 5e-168 HXXXD-type acyl-transferase family protein (.1) Potri.003G019900 [exp] 543 / 0 AT5G17540 410 / 3e-140 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 530 / 0 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.001G447500 [exp] 517 / 0 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447700 [exp] 517 / 0 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 695 / 0 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 576 / 0 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 541 / 0 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 528 / 0 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 511 / 8e-180 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 506 / 6e-178 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 420 / 3e-146 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 362 / 3e-124 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10001027 [exp] 283 / 7e-93 AT5G17540 210 / 1e-64 HXXXD-type acyl-transferase family protein (.1) Lus10043189 [exp] 264 / 1e-83 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.013G074500.1 pacid=42812122 polypeptide=Potri.013G074500.1.p locus=Potri.013G074500 ID=Potri.013G074500.1.v4.1 annot-version=v4.1 ATGGCTTCATCACCCGCTTCTCTGGTTTTCAAAGTTCACAGACGTGAGCCCGAGCTGATCAAACCAGCGAAGCCCACCCCACATGAGTTCAAACTGTTAT CTGACATTGATGACCAAGAAGGGCTTCGATTCCACATTCCAGTCATACAATTCTATCGCCACAATCCCTCAGTGCAAGGGAAAGACCCCGTCAAGGTCAT CAGAGAGGCAATTGCTAAAACGTTGGTGTTTTACTATCCATTTGCCGGTAGGCTGAGGGAAGGGCAAAACCGCAAGCTCATGGTGGAATGCACTGGCGAG GGTATCTTGTTTATAGAGGCTGACGCTGATGTTACACTTGAGCAGTTTGGTGATGCACTTCAACCTCCATTTCCTTGCCTGGAGGAGCTCATCTTTGATG TCCCTGGCTCTAGCGGGGTTCTAAACTGCCCTCTGTTACTTATTCAGGTGACACGCCTCAAGTGTGGTGGTTTTATCTTTGGCCTTCGCCTCAATCATAC CATGAGTGATGCCTCCGGCATAGTCCAATTCATGGCAGCGGTTGGTGAGATGGCACGCGGAGCCACTACCCCCTCCGTCCCAGCTGTGTGGGAAAGGCAT GTTCTGAATGCAAGAAACCCACCACGGGTTACATGCATACACCGTGAGTACGAGGAGGTAGCTGACACCAACGGTACAATTATTCCACTTGATGATATGG CTCATCGTTCCTTTTTCTTTGGCCCTTCAGAGATATCTGCTCTTCGAAAATTGATCCCGCCTCACCTTAGCCGTTGTTCCACTTTCGAAATATTAACAGC ATGTCTTTGGAAATGTCGTACCATTGCCCTCCAACCAGATCCTACTGAAGAGATGCGCATAATATGCATTGTCAATGCTCGTGAGAAATTTAACCCTCCA TTACCAACTGGATACTACGGTAATGGCTTTGCTTTTCCGGTAGCAGTGGCAACTGCCGGGGAACTCTCGGAGAAGCCATTTGGATATGCCTTGGAATTGG TAAGAAAGGCCAAGGCTGACGTGACTGAGGAATATATGCGATCGGTAGCATCTTTGATGGTAACTAAGGGGAGGCCTCATTTTACAGTGGTAAGGGCATA CCTTGTATCGGACTTAAGAAGTGCAGGATTCGAAGTGGTAGATTTCGGTTGGGGTAATGCTATATACGGCGGGGCTGCCAAAGGTGGAGTTGGGGCAATC CCTGGAGTTGCAAGCTTTTTAATTCCATTTAAAAACAAGAAAGGAGAAAATGGGATTGTGGTGCCGTTTTGCTTGCCAGCTCCTGCCATGGAAAGATTTG TCGAGGAGCTTGACGGTATGTTGAAGGGCCAGCTACAAAGTGGGCAAACTCATTCCAAATTTATCGCGTCTTCCTTATAA
AA sequence Show only first row Show all	>Potri.013G074500.1 pacid=42812122 polypeptide=Potri.013G074500.1.p locus=Potri.013G074500 ID=Potri.013G074500.1.v4.1 annot-version=v4.1 MASSPASLVFKVHRREPELIKPAKPTPHEFKLLSDIDDQEGLRFHIPVIQFYRHNPSVQGKDPVKVIREAIAKTLVFYYPFAGRLREGQNRKLMVECTGE GILFIEADADVTLEQFGDALQPPFPCLEELIFDVPGSSGVLNCPLLLIQVTRLKCGGFIFGLRLNHTMSDASGIVQFMAAVGEMARGATTPSVPAVWERH VLNARNPPRVTCIHREYEEVADTNGTIIPLDDMAHRSFFFGPSEISALRKLIPPHLSRCSTFEILTACLWKCRTIALQPDPTEEMRIICIVNAREKFNPP LPTGYYGNGFAFPVAVATAGELSEKPFGYALELVRKAKADVTEEYMRSVASLMVTKGRPHFTVVRAYLVSDLRSAGFEVVDFGWGNAIYGGAAKGGVGAI PGVASFLIPFKNKKGENGIVVPFCLPAPAMERFVEELDGMLKGQLQSGQTHSKFIASSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G074500 [exp]	0	1
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.013G149200 [exp]	2.82	0.9252
					Potri.001G062100 [exp]	3.74	0.8602
AT5G62200			Embryo-specific protein 3, (AT...		Potri.012G130900 [exp]	4.24	0.8436
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.018G051300 [exp]	4.89	0.8999
AT3G63380			ATPase E1-E2 type family prote...		Potri.013G040201 [exp]	6.63	0.7782
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Potri.015G148500 [exp]	6.92	0.8689
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171100 [exp]	7.74	0.8859
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171128 [exp]	10.24	0.8685
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.006G171156 [exp]	11.48	0.8679
AT4G28560		RIC7	ROP-interactive CRIB motif-con...		Potri.005G227600 [exp]	15.09	0.7389

Compare expression of checked genes

Potri.013G074500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.