Plant FIBer expression Database

Potri.013G074800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
ATCG01100 237 / 5e-78 ATCG01100.1, NDHA NADH dehydrogenase family protein (.1)
ATMG01275 64 / 3e-13 ND1, ATMG01275.1, NAD1A NAD\(P\)H DEHYDROGENASE 1, NADH dehydrogenase 1A (.1)
AT2G07785 59 / 8e-12 NADH dehydrogenase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0425 ComplexI-N PF00146 NADHdh NADH dehydrogenase
Representative CDS sequence
>Potri.013G074800.1 pacid=42812193 polypeptide=Potri.013G074800.1.p locus=Potri.013G074800 ID=Potri.013G074800.1.v4.1 annot-version=v4.1
ATGATAATTGATACAACAACAGTACAAGCTATCAATTCTTTTTCTAAATTGAAATCCTTAAACGAGGTCTATGGAATTATATGGATGCTTGTCCCTATTT
TAACTCTTGTATTGGGAATCATGATAGGCATATTAGTAATTATGTGGTTAGAGAGAGAAATTTCTGTAGGGATACAACAATGTATTGGACTTGAATATGC
CGGTCCTTTTAGAGTTCTTCAAGCTCTCCCGGATGGAACAAAACTACTTTTCAAAGAAAATCTTTTTTCATCTAGAGGAGATACTCGCTTATTCAGTATT
GGACCATCCATAGTAGTCATATCAACTCTATTAAGCTATTTAGTAATTCCTTTTGGCTATCACTTTGTTTTAGCGGATCTAAATATCTTCTTTTTATGGA
TTGTCATTTCAAGTATTGCTCCCATTGGACTTCTTATGTTAGGATATGGATCAAATAATAAATATTCTTTTTTAGGTGGTCTACGAGTTGCTGCTCAATC
GATTAGTTATGAAATACCATTAACTCTCTGTGTATTTTATCCATATCTTTACGTGCGATTCGTTGAAACATAA
AA sequence
>Potri.013G074800.1 pacid=42812193 polypeptide=Potri.013G074800.1.p locus=Potri.013G074800 ID=Potri.013G074800.1.v4.1 annot-version=v4.1
MIIDTTTVQAINSFSKLKSLNEVYGIIWMLVPILTLVLGIMIGILVIMWLEREISVGIQQCIGLEYAGPFRVLQALPDGTKLLFKENLFSSRGDTRLFSI
GPSIVVISTLLSYLVIPFGYHFVLADLNIFFLWIVISSIAPIGLLMLGYGSNNKYSFLGGLRVAAQSISYEIPLTLCVFYPYLYVRFVET

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
ATCG01100 ATCG01100.1, ND... NADH dehydrogenase family prot... Potri.013G074800
[exp]
0 1
ATCG00710 ATCG00710.1, PS... photosystem II reaction center... Potri.019G028200
[exp]
2.44 0.9799
ATCG01090 ATCG01090.1, ND... NADPH dehydrogenases (.1) Potri.013G074950
[exp]
5.91 0.9643
ATCG01110 ATCG01110.1, ND... NAD(P)H dehydrogenase subunit ... Potri.013G074650
[exp]
6.00 0.9751
ATCG00130 ATCG00130.1, AT... ATPase, F0 complex, subunit B/... Potri.013G137900
[exp]
10.19 0.9632
ATCG00730 ATCG00730.1, PE... photosynthetic electron transf... Potri.011G074600
[exp]
10.90 0.9598
ATCG00420 ATCG00420.1, ND... NADH dehydrogenase subunit J (... Potri.013G163200
[exp]
11.22 0.9617
ATCG00150 ATCG00150.1, AT... ATPase, F0 complex, subunit A ... Potri.013G139080
[exp]
15.09 0.9621
ATCG00710 ATCG00710.1, PS... photosystem II reaction center... Potri.011G074901
[exp]
15.65 0.9407
ATCG00720 ATCG00720.1, PE... photosynthetic electron transf... Potri.011G074750
[exp]
15.68 0.9350
ATCG00160 ATCG00160.1, RP... ribosomal protein S2 (.1) Potri.013G139670
[exp]
17.88 0.9625

Potri.013G074800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.