Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35980 1134 / 0 YAK1 yeast YAK1-related gene 1 (.1.2) AT2G40120 202 / 2e-55 Protein kinase superfamily protein (.1) AT3G17750 207 / 5e-55 Protein kinase superfamily protein (.1) AT1G73450 202 / 3e-53 Protein kinase superfamily protein (.1) AT1G73460 202 / 3e-53 Protein kinase superfamily protein (.1) AT4G32660 177 / 2e-48 AME3 Protein kinase superfamily protein (.1.2.3) AT3G53570 174 / 1e-46 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G24740 172 / 2e-46 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT3G25840 169 / 2e-43 Protein kinase superfamily protein (.1.2) AT3G53640 160 / 6e-41 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043400 [exp] 1554 / 0 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.008G069000 [exp] 216 / 2e-59 AT2G40120 607 / 0.0 Protein kinase superfamily protein (.1) Potri.012G039700 [exp] 206 / 1e-54 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.010G188400 [exp] 202 / 1e-54 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.006G244400 [exp] 189 / 1e-52 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.015G033400 [exp] 200 / 2e-52 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1) Potri.015G085700 [exp] 175 / 3e-47 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 174 / 4e-47 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.010G049100 [exp] 172 / 2e-46 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020366 [exp] 1271 / 0 AT5G35980 1159 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10009542 [exp] 1267 / 0 AT5G35980 1147 / 0.0 yeast YAK1-related gene 1 (.1.2) Lus10028283 [exp] 213 / 2e-58 AT2G40120 587 / 0.0 Protein kinase superfamily protein (.1) Lus10040203 [exp] 209 / 2e-56 AT2G40120 590 / 0.0 Protein kinase superfamily protein (.1) Lus10031902 [exp] 208 / 3e-55 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10042297 [exp] 208 / 6e-55 AT1G73450 1335 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 206 / 1e-54 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1) Lus10036878 [exp] 176 / 9e-48 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 172 / 4e-46 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10025301 [exp] 167 / 3e-44 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.013G075300.2 pacid=42810858 polypeptide=Potri.013G075300.2.p locus=Potri.013G075300 ID=Potri.013G075300.2.v4.1 annot-version=v4.1 ATGGATGAAGTCGGTTCAAATGAATTGGATGAGCCATCAATTCCATGGCGGCCGAGGCAGCTGGCATTTGGACAGTACAGGCAGGAGAGTGAACCTGCCA ACAAGGAGCAAATTTTGCGTGTTGTTGTAAGAAGACCTTTGGTTGCAAGGCTAACCAAAGACATAGTCGAAACATATCAGATATGCAATCCACAATTTAA ATATTCCGAAGAATTAAATCCAAAAAGATATTTGACCAGCCCATCAGCTGGAGTCCTCAACGACGGCCATGATAATGTGAACTCAGATCTTATTCTGACT GTGAACTTTGCTTTGGTAAATTTAGACACACAGAGAAGATACATAGTCAAGGATGTTCTTGGTCATGGGACTTTTGGGCAGGTTGCTAAATGCTGGGTCG CAGAAACCAACAGTTTTGTTGCTGTGAAGATAATAAAAAACCAACCTGCTTACTATCAGCAAGCTCTGGTTGAAGTATCTATTTTGACAACGTTAAACAA GAAGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTACTTTGTATACCAGCGGCATTTATGCATCTGTTTTGAACTTCTTGACACAAAT CTGTATGAGCTTATCAAGATAAATCAATTTAGGGGGTTATCATTGAGCATTGTCCAATTATTCTCTAAGCAGATTTTACGTGGGTTGGCTCTGTTAAAAG ATGCTGGGATAATCCATTGTGATCTGAAGCCAGAAAACATTCTTCTGTGCACAAGTTTGAAGCCTGCAGAAATTAAGATAATTGATTTTGGATCAGCATG CATGGAAGACCGCACTGTTTACTCCTACATTCAGAGCCGTTACTATAGATCTCCTGAAGTTCTTCTAGGTTGTCAATATTCTACGGCTATTGACATGTGG TCCTTCGGGTGCATAGTTGCAGAATTGTTTCTAGGATTGCCACTTTTTCCTGGTGCTTCAGAATTTGATCTCTTGAGGAGAATGATTGAAATACTTGGAG GACAACCCCCTGATTATGTCCTAAAAGAGGCAAAGAATGTTAGTAAGTTCTTCAAGTGCATTGGGAGTGTCCAGAATCTAGAGAGTGGCGAAGTTTCTTT GGGAGGAAGAAATGCATACCAAGCATTAACAGTGGAAGAATATGAATCTAGAGAGCGGAAGAAACCATCTATTGGGAAGGAGTATTTCCATCATATGAAC CTTGAGGCAATTGTTACAAACTATCCTTACAGAAAGAATTTGCCACTGGAAGATATGAAGAAAGAAAGTCAAATACGATTAGCTTTGATTGATTTCTTGA GGGGTCTTGTTGAGTTTGATCCTGCGAAACGGTGGTCCCCTTTTCAGGCTTCAAAACATCCTTTTGTAACTGGGGAACCTTTCACATGCCCATACAAGCC TCCCTTGGAGACCCCTCGTATGCCTGTTTCCCAAAATATCAAGGTGGACCATCACCCAGGTGGAGGGCATTGGTTTGCTGCTGGTCTCTCTCCTAATAAT CATGGAAGGGCCAGAGTTTCCTTGCATAATAGCCCACATTTCCAGGCGGTTCCATATGGTCATGGTACTAGTTATGGTAGTGTAGGAAGCCATGGTAGCT ATAATGATGGCATTGGCCTTGGAAGCAGCTATGGAAGCTATGGAGATGGCAGTAATATGTTTGCATACTATTCACCAGTTGCTCCATCTGGCATGAACAT GCATCCACAGGCTGGTCTGGCATTGCTTGGAAGTAGTCCAGATGCAAGATGGAGGTTTATTCAATATTCACATGGAAATGGTCTTGGTATGAGTCCATCA GCAGGAAATTTTGCACCACTTCCCCTTGGAACCAGTCCTTCACAGTTTACTCCACCAAGCTCCTACAGTCAAGCTTCAGCTGGTTCTCCTGGACATTATG GTCCAACTTCCCCTGCAAGAAGCTGCAGTCATGGATCGCCTCTAGGAAAAATGGCTGCAGTTACACAATTTAATAGAAGAAAAAGTTGGGGGCATTCTGG AAGTTATCAATCTCAAGATTGTACATCTTCAAATTGGCAAGGACAATCCACTGATGGTGCTTGCTCTAACCAATCTGAGGAAAATCCTTCAGTACTTGGT AGTTCACCCTCACATCGGCAGTCAAGCTGGATGCAGCAACAAGGAGGCAGTGGAAGTGCAGCAGGTCCCTCAACCATTCAGAGTATTCCAGGCTCGTTTA AGCCTGCTCCTAATATGAAATGTCCTCAAAGTGCGGGGCCTATTCATGATAAGCCCGAGGCTAGCCTTTCACTGCCGGATCCAGGGGACTGGGATCCCAA TTACAGTGATGAACTTCTTCTTCAAGAGGATGGTTCTGATGTGAGTTCCATAAGCACTGAGTTTAGCAATAGCGTGCATCTTGGTTCTGGTGTTCCAGTG GTAGGTGTTGGAAGATCCAACCGAGCCTCAAATGCAAGCTCCAGCTCATTAAACCAAAGAAATGGGCCTTTTCATGCATTTTCACATGTTGACGCGGGAA GCCCGCCTTCAGCACATGATCTTCATGCTGGATATGGTCGTTCAATGTCAAAGCCTTCATACTTTACACCTCATATCTCACAAAATTCTCCAAGCCGATT AGGACAGCAACCCCCTCAGCGGTTTAGTCATGGAAGGCCCACTGTTCGGGGTAGTGAATGGAATCATATCAAGGTCCAGCCCCCTTCATCCAGCTTCAAT TCCGGGGGGCAACGTTCTCCAGGAAGTAGTTCATTGAACAACAGCATGCCATGGGGGCGTAGGGCCAATTTCAATAGCATTCCACCACCATCCCGAGGAA GAAAAGACTTTGAAAGGATTGCCTAG
AA sequence Show only first row Show all	>Potri.013G075300.2 pacid=42810858 polypeptide=Potri.013G075300.2.p locus=Potri.013G075300 ID=Potri.013G075300.2.v4.1 annot-version=v4.1 MDEVGSNELDEPSIPWRPRQLAFGQYRQESEPANKEQILRVVVRRPLVARLTKDIVETYQICNPQFKYSEELNPKRYLTSPSAGVLNDGHDNVNSDLILT VNFALVNLDTQRRYIVKDVLGHGTFGQVAKCWVAETNSFVAVKIIKNQPAYYQQALVEVSILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTN LYELIKINQFRGLSLSIVQLFSKQILRGLALLKDAGIIHCDLKPENILLCTSLKPAEIKIIDFGSACMEDRTVYSYIQSRYYRSPEVLLGCQYSTAIDMW SFGCIVAELFLGLPLFPGASEFDLLRRMIEILGGQPPDYVLKEAKNVSKFFKCIGSVQNLESGEVSLGGRNAYQALTVEEYESRERKKPSIGKEYFHHMN LEAIVTNYPYRKNLPLEDMKKESQIRLALIDFLRGLVEFDPAKRWSPFQASKHPFVTGEPFTCPYKPPLETPRMPVSQNIKVDHHPGGGHWFAAGLSPNN HGRARVSLHNSPHFQAVPYGHGTSYGSVGSHGSYNDGIGLGSSYGSYGDGSNMFAYYSPVAPSGMNMHPQAGLALLGSSPDARWRFIQYSHGNGLGMSPS AGNFAPLPLGTSPSQFTPPSSYSQASAGSPGHYGPTSPARSCSHGSPLGKMAAVTQFNRRKSWGHSGSYQSQDCTSSNWQGQSTDGACSNQSEENPSVLG SSPSHRQSSWMQQQGGSGSAAGPSTIQSIPGSFKPAPNMKCPQSAGPIHDKPEASLSLPDPGDWDPNYSDELLLQEDGSDVSSISTEFSNSVHLGSGVPV VGVGRSNRASNASSSSLNQRNGPFHAFSHVDAGSPPSAHDLHAGYGRSMSKPSYFTPHISQNSPSRLGQQPPQRFSHGRPTVRGSEWNHIKVQPPSSSFN SGGQRSPGSSSLNNSMPWGRRANFNSIPPPSRGRKDFERIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Potri.013G075300 [exp]	0	1
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Potri.019G043400 [exp]	3.00	0.6934
AT4G11670			Protein of unknown function (D...		Potri.001G108400 [exp]	6.40	0.7191
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Potri.010G128600 [exp]	7.61	0.7030	PFT1.1
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Potri.016G091700 [exp]	9.79	0.6396	Pt-TKI1.1
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.010G023800 [exp]	11.66	0.6562	Pt-CUL1.3
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.006G198300 [exp]	17.88	0.6867	Pt-UBP12.2
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Potri.006G225100 [exp]	22.22	0.6110
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.013G020400 [exp]	24.08	0.5654	SNF4.4
AT1G69580	GARP		Homeodomain-like superfamily p...		Potri.008G087600 [exp]	24.14	0.6501
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	27.20	0.6199

Compare expression of checked genes

Potri.013G075300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.