Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27690 585 / 0 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT3G48520 386 / 2e-129 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT5G63450 375 / 3e-125 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT1G34540 369 / 1e-122 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1) AT3G56630 364 / 4e-121 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT3G01900 355 / 2e-117 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT5G23190 343 / 3e-112 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 327 / 9e-107 Cytochrome P450 superfamily protein (.1) AT1G63710 326 / 7e-106 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT1G01600 322 / 8e-104 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G185300 [exp] 655 / 0 AT2G27690 604 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.009G145400 [exp] 651 / 0 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.010G236700 [exp] 638 / 0 AT2G27690 576 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.012G096800 [exp] 405 / 1e-136 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.016G031700 [exp] 404 / 1e-136 AT3G56630 629 / 0.0 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.002G042100 [exp] 390 / 9e-131 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220900 [exp] 388 / 3e-130 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.005G220700 [exp] 387 / 9e-130 AT3G48520 436 / 4e-149 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042200 [exp] 385 / 7e-129 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014741 [exp] 396 / 3e-133 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 388 / 3e-130 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033853 [exp] 379 / 2e-126 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10041562 [exp] 366 / 3e-121 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10012531 [exp] 355 / 5e-117 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10033852 [exp] 335 / 2e-109 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10017394 [exp] 334 / 3e-108 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 331 / 2e-107 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10043378 [exp] 317 / 1e-105 AT2G27690 341 / 1e-115 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Lus10036024 [exp] 322 / 5e-104 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.013G075600.1 pacid=42812516 polypeptide=Potri.013G075600.1.p locus=Potri.013G075600 ID=Potri.013G075600.1.v4.1 annot-version=v4.1 ATGGAGCTTGAATCTTCCTGGCTCTTGCACGCTCTTTATGCCTTTTGTTTTATCCTTGTCTTCATCATCATCGTTTCTCCTCGTTTTGCTCTCTTTCTCT ACTTGCTGCTACTAAAGCTGTGGTGCAACTGTGAGATATGTGATGCTTATCTAAACTTGAGCTGGGCCAAAAGTTTTGATAATCTTTGTGATTGGTATGC TCATCTCTTGAAACATTCTCCGACAAAAACTATTCCCATACATGTTCTTGGCAACATCATTACAGCCAATCCAGAAAACATTAAGTATATGCTTAAAACG AGATTTGATAATTACCCCAAAGGGAAGCCTTTCTCTTTGATACTGGGCGACTTTTTGGGTCGAGGCATATTCAACGTTGATGGTGACATGTGGAGGTTCC AGAAGAACATGGCAAGTCTAGAGCTCGACAGGCTCTCAATAAGATCAAATGCTTTTGAGATCGTTCGATGTGAGATTGAGAAACGCCTTCTTCCTCTACT AGTCTCCTTCTCGGGCAAAGAAGATGGGATTTTGGACTTGCAAGATGTTTTCCGAAGATTTTCATTCGATAGCATATGCCAATTTTCATTTGGGCTAGAC CCCAAGTGCTTGCAGCTGTCTTTACCCATGTCAGAATTCGCTGTTGCTTTTGACCTAGCTTCCAAATTTTCGGCCGAGAGAGCCATGGCTGTGTCTCCCC TTGTGTGGAAGATCAAGCGGAAGTTGAATATCGGTTCTGAGAAGAAAATGAAAGAGGCTATCAAGATCATCGACATTTTAGCACAAGAGGTAATGAGGCA AAAGCGTGTAAAGGGGTTTTCAACTCATAAAGATCTTCTGTCTCGGTTTATGCGTACTGTAGATGATGATACATACTTGAGAGATATTGTCATAAGTTTC CTCTTAGCAGGCCGTGACACTGTTGCTTCAGCTTTAACCAGCTTCTTCTGGTTACTGGCGAAGCACCCAGAGATCGGTTCAGCAATCCAGGTGGAGGCAG ATAGAGTTCTAGGTCCGAATCAGGAGCCCAAAAGTTTTGAGGAAATTCAACAGCTTCACTATTTGCAAGCAGCAGTGCACGAGAGTATGAGACTTTACCC TCCTATCCAATTTGATTCAAAGTTTTGTCAGCAAGATGATGTCTTGCCCGATGGGACTTTTGTGAAGAGAGGAACTCGGGTTACATATCATCCCTACGCA ATGGGAAGGATGGAAGAGATATGGGGTCCGGATTGCCTAGAATTCAAGCCAGAGAGGTGGTTAAGAGATGGCGTCTTCTTCTCTGAAAACCCTTACAAGT ATCCAATATTCCAAGGTGGATTTAGGGTGTGTTTGGGCAAGGACATGGCCTTGATGGAGATCAAGAGTGTCTGCCTCTCACTGCTCCAACGTTTCCACTT CAAATTAGTGTTTCCATGCCACAGTACCCCACGATTCTCTCCCGGCCTCACCTCTACTTTTAGAGATGGGCTCCTGGTTCTGGTACGAGAAAAGGTAACT CAACTCTCCCATCGCAATTATATGGTGCACGTTGATTAG
AA sequence Show only first row Show all	>Potri.013G075600.1 pacid=42812516 polypeptide=Potri.013G075600.1.p locus=Potri.013G075600 ID=Potri.013G075600.1.v4.1 annot-version=v4.1 MELESSWLLHALYAFCFILVFIIIVSPRFALFLYLLLLKLWCNCEICDAYLNLSWAKSFDNLCDWYAHLLKHSPTKTIPIHVLGNIITANPENIKYMLKT RFDNYPKGKPFSLILGDFLGRGIFNVDGDMWRFQKNMASLELDRLSIRSNAFEIVRCEIEKRLLPLLVSFSGKEDGILDLQDVFRRFSFDSICQFSFGLD PKCLQLSLPMSEFAVAFDLASKFSAERAMAVSPLVWKIKRKLNIGSEKKMKEAIKIIDILAQEVMRQKRVKGFSTHKDLLSRFMRTVDDDTYLRDIVISF LLAGRDTVASALTSFFWLLAKHPEIGSAIQVEADRVLGPNQEPKSFEEIQQLHYLQAAVHESMRLYPPIQFDSKFCQQDDVLPDGTFVKRGTRVTYHPYA MGRMEEIWGPDCLEFKPERWLRDGVFFSENPYKYPIFQGGFRVCLGKDMALMEIKSVCLSLLQRFHFKLVFPCHSTPRFSPGLTSTFRDGLLVLVREKVT QLSHRNYMVHVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.013G075600 [exp]	0	1
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.001G144300 [exp]	1.00	0.9839
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152500 [exp]	2.00	0.9808
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G151400 [exp]	3.46	0.9630
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.011G064700 [exp]	4.00	0.9360
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G145200 [exp]	4.00	0.9565
AT5G25840			Protein of unknown function (D...		Potri.018G045600 [exp]	6.32	0.9492
AT1G69320		CLE10	CLAVATA3/ESR-RELATED 10 (.1)		Potri.008G093500 [exp]	8.77	0.9381
					Potri.007G119100 [exp]	9.79	0.9320
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Potri.009G010700 [exp]	10.81	0.9319	CNGC15.1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125100 [exp]	11.61	0.9259

Compare expression of checked genes

Potri.013G075600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.