Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17070 853 / 0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) AT2G42330 715 / 0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1.2) AT3G09850 53 / 8e-07 D111/G-patch domain-containing protein (.1) AT5G26610 52 / 9e-07 D111/G-patch domain-containing protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G043200 [exp] 1143 / 0 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.018G113600 [exp] 58 / 3e-08 AT3G09850 524 / 3e-176 D111/G-patch domain-containing protein (.1) Potri.005G002700 [exp] 55 / 7e-08 AT5G26610 294 / 1e-99 D111/G-patch domain-containing protein (.1.2.3) Potri.013G002100 [exp] 54 / 1e-07 AT5G26610 289 / 1e-97 D111/G-patch domain-containing protein (.1.2.3) Potri.006G189501 [exp] 51 / 4e-06 AT3G09850 436 / 1e-142 D111/G-patch domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000930 [exp] 1027 / 0 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10002252 [exp] 631 / 0 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10006830 [exp] 495 / 8e-167 AT1G17070 469 / 3e-157 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10002251 [exp] 196 / 2e-58 AT1G17070 132 / 2e-36 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10036327 [exp] 66 / 2e-10 AT3G09850 468 / 8e-154 D111/G-patch domain-containing protein (.1) Lus10019584 [exp] 64 / 3e-10 AT3G09850 378 / 7e-120 D111/G-patch domain-containing protein (.1) Lus10031446 [exp] 55 / 1e-07 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10001513 [exp] 54 / 2e-07 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10006831 [exp] 43 / 7e-05 AT1G17070 56 / 2e-10 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [poplar] [flax] G-PATCH PF01585 [poplar] [flax] G-patch G-patch domain CL0449 [poplar] [flax] PF07842 [poplar] [flax] GCFC GC-rich sequence DNA-binding factor-like protein CL0449 [poplar] [flax] PF12457 [poplar] [flax] TIP_N Tuftelin interacting protein N terminal
Representative CDS sequence Show only first row Show all	>Potri.013G076000.1 pacid=42812179 polypeptide=Potri.013G076000.1.p locus=Potri.013G076000 ID=Potri.013G076000.1.v4.1 annot-version=v4.1 ATGGATGATTACCAGGAGGAAATGGAAAGATTTGGGATGGAGAATGACTTCGAAGACGGCCGATATATAAATGGAGAGTTCTACTTTAAAAAACAGAAAG AAAAACGAAAGCAATCCAAAGATGATGTTCTTTATGGTATCTTTGCGGATTATGACTCCGATGATGATTACGTTTCCTCTTCGCGAAAGAGGAGAAAAGA CTCCCGAAAAGCTGATCTCACTAAGCCTGTCAATTTTGTCTCCACAGGTACTGTTATGCCTAACCAAGAAATTGATAAGAATTTGAGAGACAAGAACAGT GATGTTATGTTTGCTGCTGCTGATGACAACAGACCTGGAATAGGGTCTGGTTTTAATACTGGGTTAGGGTTTAATTCAGGGCTTGGTGATTTTAATGGGG TTAAAAAGAGTGAGGATTTTGAGGATGATGGTCGTGACGAGGCTGAAGATAACTTTTTGCCAACAGAGTTTGGGAGAAGGATAAAGGAGGGGGCAGAAAG GAGAGAGCAGGAGAGAATGGAGAAGAAAGCAAAAGGAGTGGGGAAAAACAAGGAAGTGAAAGATGGGGATGTTGGGGTGTTTGAGAAGCATACAGTAAAA GGAATTGGGATGAAGTTGTTAGAGAAAATGGGTTATAAGGGAGGTGGATTGGGGAAGAACCAGCAAGGAATTGTAGCCCCAATTGAAGCAAAGATGAGGC CAAAAAATATGGGAATGGGGTTCAATGATTTTAAAGAAACATCAGCTAAGTTGCCTCAATTTGAGGAGAAGGAAGCTGTGAGCCAAAGCCAGGGTCAGAT GGTGGGGAGAATGAAGGAGAAGCTATGGTTGAAGGGTAAGAAGAAGCAGAAGCAGGAGAAGTATATAACAGCAGATGAATTGTTGGCAAAGAAGGAAGAA CAAGGTTTTGAGGTTTTTCAGAAGGTGATTGACATGCGAGGGCCGCAGGTGAGGGTGCTGACAAATCTGGAGAATCTTAATGCAGAAGAGAAGGCGAAGG AGAATGATGTTGCGATGCCAGAGCTTCAGCATAATGTGAGGTTGATCGTGGATTTGGCAGAGCTTGATATACAGAAGATTGACAGAGATCTGAGGAATGA AAGGGAGACTGCTATGAGCTTGCAGCAGGAGAAGGAGAAGTTGGAAACAGAGGCAGCACGCCAGAAGAAGCAATTGGATAATGTGGAGGAGATCATGGGT GTGCTGAGCCATATTGAGGAACAGAAGTCTTCAGGAACTTTGACCTTGGATTCACTAGCAAAGTATTTCACAGACATAAAGCGGAAATTTGCAGAAGATT ATAAGCTTTGCAACTTGTCTTGCGTTGCTTGTTCATATGCTTTACCTTTGTTTATCAGAGTATTTCAGGGCTGGGATCCTCTTAGAAATCCATTGCATGG ATTGGAAGTAGTAGAATTATGGAAGAATGTGCTGCAAGGTGAGGAAAGTAGTGATATATGGGATGAAGTTGCACCTTATGCACAGTTAGTAACAGAAGTA GTTTTGCCTGCTGTAAGAATATCTGGGATTAATACTTGGGAGCCTAGGGACCCTGAACCCATGCTTAGATTTTTGGAGTCTTGGGAGAATTTGTTGCCTG CAGCAGTTGTTCAGAGCATCTTGGATAATATAGTTATGCCAAAATTATCTAGTGCTGTGGACTCATGGGACCCACGTCGGGAAACCGTTCCCATTCATGT TTGGGTACATCCATGGCTGCTGCAGTTGGGATTGAAATTGGAGGGCTTGTACCAGATGATACGAATGAAGTTAAGTATGGTTCTTGATGCGTGGCACCCT AGTGACGCATCTGCTTACACCATCTTATCACCTTGGAAAACTGTGTTTGATGCAGCCAGTTGGGAAAATCTTATGCGCAGATTTATAGTTCCCAAGTTGC AGGTTGCATTGCAGGAGTTCCAAATAAACCCAGCTAATCAGAAGCTTGATCAGTTCTATTGGGTTATGTCATGGGCTTCAGCTATTCCAATTCATCTCAT GGTTGACTTGATGGAGAGGTTTTTCTTTTCGAAATGGCTGCAGGTTTTGTATCACTGGCTCTGTTCAAATCCTAACTTACAAGAGGTTCATAAATGGTAC ATTGGTTGGAAGGGACTTCTTCCACAAGAGCTTCAGGCACATGAAAATATTCGTTATCAGTTTACTCTTGGACTCAACATGATTGATCGGGCTATTGAAG GTATGGAAGTGGTCCAGCCTGGTCTGAGGGAGAACCTCAGTTATATTAGGGCACAGGAGCAGAGGCAGTTTGAGGCCCAGCAAAGAGCTGCAATGCATTC TCAATATCAAACTGCTGCTGGCATGGGTAGCACAACGCAAATGGGTGGTTTTGGTGGCGGTGCAGTTGAGATGACTTTGAAAGAAGTTGTTGAGGCCCAT GCACAACATCACAGCTTGCTCTTTAAGCCAAAACCTGGCAGGATGCATGATGGTCACCAGATATATGGGTATGGTAACATGAGCATATATGTGGATCCAA TACATGAAAGGTTATATGTCCAGAAGGAGGAAGATTGGTTACTGACAAACCTTGATAATTTGCTTGAGATGCATAATAATTCTCTTAAAAAGAGACGGTG A
AA sequence Show only first row Show all	>Potri.013G076000.1 pacid=42812179 polypeptide=Potri.013G076000.1.p locus=Potri.013G076000 ID=Potri.013G076000.1.v4.1 annot-version=v4.1 MDDYQEEMERFGMENDFEDGRYINGEFYFKKQKEKRKQSKDDVLYGIFADYDSDDDYVSSSRKRRKDSRKADLTKPVNFVSTGTVMPNQEIDKNLRDKNS DVMFAAADDNRPGIGSGFNTGLGFNSGLGDFNGVKKSEDFEDDGRDEAEDNFLPTEFGRRIKEGAERREQERMEKKAKGVGKNKEVKDGDVGVFEKHTVK GIGMKLLEKMGYKGGGLGKNQQGIVAPIEAKMRPKNMGMGFNDFKETSAKLPQFEEKEAVSQSQGQMVGRMKEKLWLKGKKKQKQEKYITADELLAKKEE QGFEVFQKVIDMRGPQVRVLTNLENLNAEEKAKENDVAMPELQHNVRLIVDLAELDIQKIDRDLRNERETAMSLQQEKEKLETEAARQKKQLDNVEEIMG VLSHIEEQKSSGTLTLDSLAKYFTDIKRKFAEDYKLCNLSCVACSYALPLFIRVFQGWDPLRNPLHGLEVVELWKNVLQGEESSDIWDEVAPYAQLVTEV VLPAVRISGINTWEPRDPEPMLRFLESWENLLPAAVVQSILDNIVMPKLSSAVDSWDPRRETVPIHVWVHPWLLQLGLKLEGLYQMIRMKLSMVLDAWHP SDASAYTILSPWKTVFDAASWENLMRRFIVPKLQVALQEFQINPANQKLDQFYWVMSWASAIPIHLMVDLMERFFFSKWLQVLYHWLCSNPNLQEVHKWY IGWKGLLPQELQAHENIRYQFTLGLNMIDRAIEGMEVVQPGLRENLSYIRAQEQRQFEAQQRAAMHSQYQTAAGMGSTTQMGGFGGGAVEMTLKEVVEAH AQHHSLLFKPKPGRMHDGHQIYGYGNMSIYVDPIHERLYVQKEEDWLLTNLDNLLEMHNNSLKKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17070			GC-rich sequence DNA-binding f...		Potri.013G076000 [exp]	0	1
AT3G26560			ATP-dependent RNA helicase, pu...		Potri.015G024400 [exp]	1.00	0.9617
AT1G56290			CwfJ-like family protein (.1)		Potri.001G415900 [exp]	1.73	0.9278
AT3G26560			ATP-dependent RNA helicase, pu...		Potri.012G034200 [exp]	2.00	0.9273
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Potri.017G111400 [exp]	2.44	0.9371
AT3G51650			unknown protein		Potri.006G107500 [exp]	6.48	0.9181
AT5G41020	MYB		myb family transcription facto...		Potri.003G168900 [exp]	6.92	0.9238
AT3G25840			Protein kinase superfamily pro...		Potri.008G119100 [exp]	8.06	0.9251
AT5G19900			PRLI-interacting factor, putat...		Potri.003G214300 [exp]	10.24	0.8823
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.008G055300 [exp]	11.83	0.8695
AT1G65280			DNAJ heat shock N-terminal dom...		Potri.019G083700 [exp]	15.71	0.8765

Compare expression of checked genes

Potri.013G076000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.