Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64880 532 / 0 Ribosomal protein S5 family protein (.1) AT2G33800 92 / 2e-20 EMB3113 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G045700 [exp] 80 / 3e-16 AT2G33800 316 / 6e-108 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Potri.011G053900 [exp] 66 / 1e-11 AT2G33800 246 / 1e-80 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Potri.001G256800 [exp] 42 / 0.0004 AT1G58684 405 / 7e-144 Ribosomal protein S5 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021785 [exp] 583 / 0 AT1G64880 587 / 0.0 Ribosomal protein S5 family protein (.1) Lus10034602 [exp] 572 / 0 AT1G64880 571 / 0.0 Ribosomal protein S5 family protein (.1) Lus10025445 [exp] 75 / 1e-14 AT2G33800 357 / 3e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1) Lus10015317 [exp] 75 / 1e-14 AT2G33800 358 / 2e-124 EMBRYO DEFECTIVE 3113, Ribosomal protein S5 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00333 [poplar] [flax] Ribosomal_S5 Ribosomal protein S5, N-terminal domain CL0329 [poplar] [flax] S5 PF03719 [poplar] [flax] Ribosomal_S5_C Ribosomal protein S5, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.013G076200.1 pacid=42812052 polypeptide=Potri.013G076200.1.p locus=Potri.013G076200 ID=Potri.013G076200.1.v4.1 annot-version=v4.1 ATGAACCCTAAATCATGGTCTCGCTTACTCCTCTATCAATCCCTGAAAAAACCTAGAAAACCTCCAATGCCCCAACTTTCCCGGAAAATCTCGACTTTCC CCCACTTTCCCAGCACCCAAACACTCTCACTCTCCCGTTTCTCCAAAACCCATTTCTCAACTTTCTCTGGTGCCTCCTCCAGTGTAGCCCGGGAACTTCT GAATGAGCTAGAGCGCGAGAAACAGAAGGAAAGAGAGGCAAGAAGGCGAAATGGTCTCGATACTAAAGACATTGATGCAGAAGATGAAGAAGATTACTTG GGTGTGGGTCCATTGATAGAAAAATTAGAGAAAAGGATTCAAAAGGATGCAGGGAAGCCGGAAGTTTATGATAATGAAGCTGCTGATTCGGATAGTGACG ATGATAGCTGGTTTTCTACTGATGCTGCTAAGAAAAGAGATGAACTTTTTTTAAAGAAGTTTGACAAACACGAAGAGTTAGTCAAGAACTTCGCTGAGGC TGAGACACTTGATGATGCATTCAAATCGATGAAGAAAATTGACAATTTTGAGCAAAAACATTTTCGGCTTCGTCCTGAGTATAGAGTGATTGGGGATTTG ATTAATCTTTTGAAGGTAGCAGAAGGAAAGGATAAATTTATCCTTCAACACAAATTAAACAAGGCAATGAGATTGGTGGAGTGGAAGGAAGCTTATGATC CCAATAATCCTGCCAATTATGGATTTTTTCAACGTGCAGGAGTGGGACCAGGTGGCCATGCCTTAGAAGATGCTGAATCTGAGAAGCAAAAGAAAAAAAC ACCAGGTGTGGATGTTGAGGGCAAGGAGGATGAGGATGATGGGGGCAAGGAGGATGAGGATGATGAGGACGAGGAAGATGAGTTTGATGACATGAAGGAG AGGGATGATATACTGCTAGAGAAGCTGAATGAGATTGACAAGAAACTAGAAGAGAAGTTAGCGGAGTTGGATTATACTTTTGGAAAGAAGGGGAAGGTTC TTGAGGAGGAGATAAGGAATCTCGCGGAGCAGAGAAATTCTTTGACAGAAAAGAAAAGAAGACCGATGTACCGGAAAGGTTTTGATGACAGAGTGATAAA TGTGAATCGAACTTGTAAAGTTACCAAGGGAGGGCGAGTGGTCAAGTACACTGCCATGTTAGCTTGTGGTAACTATCACGGTGTTATTGGTTTTGCTAAA GCTAAAGGCCCAAGAGTCCATGTTGCTATCCAGAAGGCACGTGAGAAATGCTTCCAGAATCTCCACTACATAGAGCGCCACGAGGAGCATACAATTGCAA ATGCAGTACAAACACAATACAAGAAAACCAAGCTGTATCTGTGGCCTGCCCCAACTAGAACAGGCATGAAAGCAGGAAAAACTGTCAAGGCCATTTTGAA TTTAGCTGGTTTCAAAAATGTTAAATCCAAGGTCATTGGTTCTAGGAATCCTTATAACACTGTCAGGGCTCTCTTTAAAGCTCTGAATGCTATTGAAACT CCAAAGGATGTCCAAGAGAAGTTTGGCCGGACTGTTGTTGAGAAACATTTGCTATGA
AA sequence Show only first row Show all	>Potri.013G076200.1 pacid=42812052 polypeptide=Potri.013G076200.1.p locus=Potri.013G076200 ID=Potri.013G076200.1.v4.1 annot-version=v4.1 MNPKSWSRLLLYQSLKKPRKPPMPQLSRKISTFPHFPSTQTLSLSRFSKTHFSTFSGASSSVARELLNELEREKQKEREARRRNGLDTKDIDAEDEEDYL GVGPLIEKLEKRIQKDAGKPEVYDNEAADSDSDDDSWFSTDAAKKRDELFLKKFDKHEELVKNFAEAETLDDAFKSMKKIDNFEQKHFRLRPEYRVIGDL INLLKVAEGKDKFILQHKLNKAMRLVEWKEAYDPNNPANYGFFQRAGVGPGGHALEDAESEKQKKKTPGVDVEGKEDEDDGGKEDEDDEDEEDEFDDMKE RDDILLEKLNEIDKKLEEKLAELDYTFGKKGKVLEEEIRNLAEQRNSLTEKKRRPMYRKGFDDRVINVNRTCKVTKGGRVVKYTAMLACGNYHGVIGFAK AKGPRVHVAIQKAREKCFQNLHYIERHEEHTIANAVQTQYKKTKLYLWPAPTRTGMKAGKTVKAILNLAGFKNVKSKVIGSRNPYNTVRALFKALNAIET PKDVQEKFGRTVVEKHLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64880			Ribosomal protein S5 family pr...		Potri.013G076200 [exp]	0	1
AT3G57000			nucleolar essential protein-re...		Potri.006G040600 [exp]	1.00	0.8639
AT1G56110		NOP56	homolog of nucleolar protein N...		Potri.012G095400 [exp]	4.00	0.8423	NOP56.2
AT3G21465			unknown protein		Potri.008G205300 [exp]	4.58	0.8542
AT2G42710			Ribosomal protein L1p/L10e fam...		Potri.014G143000 [exp]	5.09	0.8544
AT5G60960		PNM1	PPR protein localized to the n...		Potri.017G133400 [exp]	5.19	0.8088
AT3G49990			unknown protein		Potri.005G234800 [exp]	6.48	0.8337
AT5G11630			unknown protein		Potri.006G237800 [exp]	9.21	0.8344
AT1G20220			Alba DNA/RNA-binding protein (...		Potri.005G194600 [exp]	9.79	0.7851
AT4G11160			Translation initiation factor ...		Potri.001G095500 [exp]	10.90	0.7842
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G029900 [exp]	11.31	0.8241

Compare expression of checked genes

Potri.013G076200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.