Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09815 154 / 1e-49 POLD4 polymerase delta 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G042900 [exp] 199 / 9e-68 AT1G09815 152 / 8e-49 polymerase delta 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024978 [exp] 114 / 6e-34 AT1G09815 129 / 8e-40 polymerase delta 4 (.1) Lus10020362 [exp] 91 / 1e-24 AT1G09815 100 / 3e-28 polymerase delta 4 (.1) Lus10009538 [exp] 87 / 4e-23 AT1G09815 96 / 7e-27 polymerase delta 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04081 [poplar] [flax] DNA_pol_delta_4 DNA polymerase delta, subunit 4
Representative CDS sequence Show only first row Show all	>Potri.013G076400.1 pacid=42811221 polypeptide=Potri.013G076400.1.p locus=Potri.013G076400 ID=Potri.013G076400.1.v4.1 annot-version=v4.1 ATGGCAACAGCATCAAGCAACATGAAGGGTTTCTACAGGCAAAAGAAGAACAAGAATAGTGGTATCACAAAACCAACATCGTCCAAGAAATCATCCCTTC ATCACATTGCCTCTCTTGGCTCCGATATTACACAACCAACTGCCCAGGTTTCCCATGGCTCTCCTGATCATAAAGATTATTATGACGAACATGAGGGACT GTTGAGACAATTTGACATGAACATGGCATATGGGCCGTGTCTTGGGATGTCTCGGCTTGCACGTTGGGAGCGTGCTCAACGTTTAGGTCTAAACCCACCG AATGAATTTGAGGGACTGTTGAAGGCTGAAATGGTTCAATCAGAATGCTGGTGGGATGGTCGCGTTTAG
AA sequence Show only first row Show all	>Potri.013G076400.1 pacid=42811221 polypeptide=Potri.013G076400.1.p locus=Potri.013G076400 ID=Potri.013G076400.1.v4.1 annot-version=v4.1 MATASSNMKGFYRQKKNKNSGITKPTSSKKSSLHHIASLGSDITQPTAQVSHGSPDHKDYYDEHEGLLRQFDMNMAYGPCLGMSRLARWERAQRLGLNPP NEFEGLLKAEMVQSECWWDGRV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.013G076400 [exp]	0	1
AT3G01980			NAD(P)-binding Rossmann-fold s...		Potri.017G067332 [exp]	1.00	0.9311
AT1G06475			unknown protein		Potri.002G058400 [exp]	3.16	0.8901
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.003G001500 [exp]	4.89	0.8668	CLC.3
AT3G14740			RING/FYVE/PHD zinc finger supe...		Potri.011G103100 [exp]	5.74	0.8885
AT5G59970			Histone superfamily protein (....		Potri.007G013500 [exp]	6.48	0.8667	HFO909
AT5G54850			unknown protein		Potri.001G421000 [exp]	6.70	0.8515
AT5G07900			Mitochondrial transcription te...		Potri.001G034900 [exp]	6.92	0.8646
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.014G085900 [exp]	9.00	0.8576
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Potri.014G109100 [exp]	9.79	0.8362
					Potri.012G073800 [exp]	9.94	0.8222

Compare expression of checked genes

Potri.013G076400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.