Plant FIBer expression Database

Potri.013G076800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17510 311 / 3e-104 unknown protein
AT3G03460 246 / 4e-79 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G042800
[exp]
418 / 1e-145 AT5G17510 309 / 2e-102 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024530
[exp]
385 / 2e-135 AT5G17510 356 / 5e-124 unknown protein
Lus10024979
[exp]
362 / 4e-126 AT5G17510 355 / 3e-123 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15249 GLTSCR1 Conserved region of unknown function on GLTSCR protein
Representative CDS sequence
>Potri.013G076800.1 pacid=42811490 polypeptide=Potri.013G076800.1.p locus=Potri.013G076800 ID=Potri.013G076800.1.v4.1 annot-version=v4.1
ATGGAGCAGCAGCAGAAGCAACAATTGCTCTTACAACAACAAGAAGTGCAACAGCAGCAGCAGCAGCAGCAACAACAACAACAACATCAACAACAATTTC
TCTTGTTACAGCAATTAACGAAACAAGCCCAACAACAACAAGAAGCTGCCATTTCTCGATTCCCATCAAATATCGATGCCCACCTGCGTCCACCATCCAA
TCATCGCCCACTCACTCTTCACCAGCAAAACCCAAACCCTAACTCTAACCCTATTCCCAATTTGCAGCAACAGCAAGGGTCCAATTTGGGGCAAAATGCG
CAGCATTTACAGCAGCAGCAGCAAAAGGGGATTCGGCCTCAGGTGAACCAGGTGGAGCTCCAAATGGCGTACCAGGATGCTTGGCGTGTTTGCCATCCAG
ATTTCAAGAGGCCATTCTCTTCTCTTGAAGATGCTTGCGAGAGATTACTGCCTTACCATGTAGTAGCAGACTATGAGGCAGAGGAGGACGATAGAATCCT
TGATTCTGACACAACTGGCCAGATGCCATCTCGTTTGCAGCAGTGGGATCATAACATTGCTGCAAAAGTGGCAGAGTTCACAGGCACATTTGAGAAACAG
GCCTTAGCCCTCAACATAATAACCCGCAAGCGTGCCTTGGGTGAATTCCGAACTGAAGAGAGATTGATGATTGAGCAGGCTCTTCTCCAAGAGGAGAAGC
GACTTCTGCTCGATTTGAAAGCTGAAATGGATGCCAGGGAGAAGGCCGGTCGAGAGGCTCAGTTGAGAATGGCAGCTATGGTCCAGGCTGAGCAAGCTCG
GGCAGAGTCACATGCTCGTGCTGAAATGATGTCCCGGGCCCCAATAAGGCCAAGTGCACTCGGTCATGACATGAGAGAGCAGGAACACAGTGTTAACCCA
GAAGAGATGATGAATGGGTGGGGAGGCAATGCTCAGAGAGATGAGAAAGAGCCTTCTGAAGATTTCTTGAATGATGAGGAGACTGAAAATGGGGACACAG
CAGGACATGGTGAGTGGAGAGAAGTGGGAGAATTTGATCTGAACACCAGATGA
AA sequence
>Potri.013G076800.1 pacid=42811490 polypeptide=Potri.013G076800.1.p locus=Potri.013G076800 ID=Potri.013G076800.1.v4.1 annot-version=v4.1
MEQQQKQQLLLQQQEVQQQQQQQQQQQQHQQQFLLLQQLTKQAQQQQEAAISRFPSNIDAHLRPPSNHRPLTLHQQNPNPNSNPIPNLQQQQGSNLGQNA
QHLQQQQQKGIRPQVNQVELQMAYQDAWRVCHPDFKRPFSSLEDACERLLPYHVVADYEAEEDDRILDSDTTGQMPSRLQQWDHNIAAKVAEFTGTFEKQ
ALALNIITRKRALGEFRTEERLMIEQALLQEEKRLLLDLKAEMDAREKAGREAQLRMAAMVQAEQARAESHARAEMMSRAPIRPSALGHDMREQEHSVNP
EEMMNGWGGNAQRDEKEPSEDFLNDEETENGDTAGHGEWREVGEFDLNTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17510 unknown protein Potri.013G076800
[exp]
0 1
AT3G19860 bHLH bHLH121 basic Helix-Loop-Helix 121, ba... Potri.009G129600
[exp]
1.00 0.8760
AT3G22430 unknown protein Potri.010G087400
[exp]
4.24 0.8717
AT5G11310 Pentatricopeptide repeat (PPR)... Potri.006G247400
[exp]
4.89 0.8357
AT5G39785 Protein of unknown function (D... Potri.017G082300
[exp]
5.74 0.8314
AT3G59670 unknown protein Potri.005G144800
[exp]
8.48 0.8308
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.002G072900
[exp]
9.38 0.8323 SEU.1
AT1G33520 MOS2 modifier of snc1, 2, D111/G-pa... Potri.001G129700
[exp]
11.40 0.8392
AT1G79730 ELF7 EARLY FLOWERING 7, hydroxyprol... Potri.001G190000
[exp]
13.85 0.8421 PAFA901
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.006G013000
[exp]
15.87 0.8197
AT1G77850 ARF ARF17 auxin response factor 17 (.1) Potri.005G171300
[exp]
16.58 0.8156

Potri.013G076800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.