Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64970 441 / 7e-156 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT5G13710 82 / 2e-17 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G76090 73 / 4e-14 SMT3 sterol methyltransferase 3 (.1) AT3G18000 73 / 4e-14 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G48600 73 / 6e-14 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G20330 72 / 6e-14 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G73600 72 / 7e-14 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G23510 59 / 2e-09 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23530 57 / 7e-09 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23480 55 / 5e-08 Cyclopropane-fatty-acyl-phospholipid synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G263700 [exp] 91 / 3e-20 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.009G058600 [exp] 86 / 9e-19 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.016G056000 [exp] 77 / 1e-15 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.005G245800 [exp] 77 / 2e-15 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 77 / 2e-15 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.012G047400 [exp] 71 / 3e-13 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 70 / 5e-13 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.010G067900 [exp] 57 / 2e-08 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.008G170300 [exp] 55 / 5e-08 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009537 [exp] 483 / 3e-172 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10020357 [exp] 459 / 2e-163 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10018010 [exp] 76 / 6e-15 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042006 [exp] 75 / 2e-14 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031348 [exp] 75 / 2e-14 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 74 / 2e-14 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10023995 [exp] 73 / 3e-14 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10005625 [exp] 65 / 3e-11 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10011784 [exp] 58 / 6e-09 AT3G23530 1253 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10023741 [exp] 58 / 7e-09 AT3G23530 1294 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.013G077000.1 pacid=42812048 polypeptide=Potri.013G077000.1.p locus=Potri.013G077000 ID=Potri.013G077000.1.v4.1 annot-version=v4.1 ATGACTAGTATGCTACTATCCAGCACGTCACAAACCCAAATCTTCCACAACATCCGCGCGTTCCAGCCCATTCCTCACCTCCACCCATACCGTACGACGT GTCTTGCCCCACTGCCATGTCGTTCCCGGTCGATACGTTGCGCGGGGTCAACCGCCGTTGCAGACACTGGCAGTACTCGAGAGCTTAAGCAAGGCATAGC AGAGCTTTACGACGAGTCCTCTGCTGTATGGGAGGACATTTGGGGAGACCACATGCATCACGGATTCTACTACCCGGATGAAGTAGTTTCCGGGTCGGAT TCCGATCACCGGGCTGCTCAGTTCCGAATGATACAAGAGGCACTCAGTTTTGCCGGCGTCTCTGAGGACCCAGAAAAGGGGCCAAAGACTGTGGTTGATG TTGGGTGTGGGATAGGAGGCAGCTCTAGGTACATAGCAAGGAAATTTGGAGCCAAATGCCAAGGCATCACACTTAGTCCCTTCCAAGCGCAGAGGGCCAA TGCTCTTGCAGAAACTGAAGGGTTAGCTGACAAGGTTTCCTTTCAAGTTGCAGATGCATTAGAGCAGCCATTTCCAGATGGACAGTTTGATCTGGTTTGG TCAATGGAGAGTGGAGAGCATATGCCCGACAAAAGAAAGTTTGTTGGTGAATTGGCTAGAGTCGCAGCCCCAGGAGCCACAATTGTTATTGTAACATGGT GTCACAGGGTTCTTGGCCCTTCTGAAGAATCTCTTCAGCCATGGGAGATGAAGCATCTTAAAAAGATATGTGATGCTTACTATCTTCCAGATTGGTGTTC TACTGCTGATTATGTCAACTTACTTGAGTCCCTCTCTCTTCAGGATATTAAGACAGCAGATTGGTCTCAATATGTTGCTCCATTTTGGCCAGCAGTAATT CGCTCGGCATTGACGTGGAAGGGCCTGACATCTCTGCTGCGCAGTGGTATGAAAACCATCAGAGGAGCACTGGTGATGCCATTGATGATTGAAGGATACA AGAAGGGTCTGATTAAGTTTGCCATCATTACATGTAGAAAGCCCGAATAA
AA sequence Show only first row Show all	>Potri.013G077000.1 pacid=42812048 polypeptide=Potri.013G077000.1.p locus=Potri.013G077000 ID=Potri.013G077000.1.v4.1 annot-version=v4.1 MTSMLLSSTSQTQIFHNIRAFQPIPHLHPYRTTCLAPLPCRSRSIRCAGSTAVADTGSTRELKQGIAELYDESSAVWEDIWGDHMHHGFYYPDEVVSGSD SDHRAAQFRMIQEALSFAGVSEDPEKGPKTVVDVGCGIGGSSRYIARKFGAKCQGITLSPFQAQRANALAETEGLADKVSFQVADALEQPFPDGQFDLVW SMESGEHMPDKRKFVGELARVAAPGATIVIVTWCHRVLGPSEESLQPWEMKHLKKICDAYYLPDWCSTADYVNLLESLSLQDIKTADWSQYVAPFWPAVI RSALTWKGLTSLLRSGMKTIRGALVMPLMIEGYKKGLIKFAIITCRKPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Potri.013G077000 [exp]	0	1
AT3G60590			unknown protein		Potri.014G061000 [exp]	1.41	0.9709
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.017G065600 [exp]	2.00	0.9598
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056500 [exp]	4.89	0.9576
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.003G052700 [exp]	5.91	0.9573
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.007G079600 [exp]	7.07	0.9592
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	7.34	0.9607
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G088086 [exp]	8.30	0.9488
AT5G27280			Zim17-type zinc finger protein...		Potri.005G246200 [exp]	8.94	0.9542
AT5G59610			Chaperone DnaJ-domain superfam...		Potri.001G072700 [exp]	8.94	0.9504
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.002G202700 [exp]	9.16	0.9527

Compare expression of checked genes

Potri.013G077000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.