Plant FIBer expression Database

Potri.013G077200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16690 734 / 0 ORC3, ATORC3 origin recognition complex subunit 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034596
[exp]
738 / 0 AT5G16690 614 / 0.0 origin recognition complex subunit 3 (.1)
Lus10021778
[exp]
186 / 6e-55 AT5G16690 194 / 8e-59 origin recognition complex subunit 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF07034 ORC3_N Origin recognition complex (ORC) subunit 3 N-terminus
Representative CDS sequence
>Potri.013G077200.2 pacid=42811438 polypeptide=Potri.013G077200.2.p locus=Potri.013G077200 ID=Potri.013G077200.2.v4.1 annot-version=v4.1
ATGGCGCCTTCTGCCACTGCTTCTGAGTCACTGTCTCCCTCGACGACGGTGGACACCACCGAGAATAATCTCCAGCCCTTTTTTGTTCTTCACAGAGCAC
GGTCTCGGAAATCGGAGAAAAAACCAACCGGAACCTGGAAAACCAGGAGGCGTATTGATTTGTCTCCATCATTACCTAAGAATGGTGAGAACTTAGACGC
TGAGAAAGCTGAAGCATGGGATGATTGTCGGCATGTGAGCATAAGAATGGAAGCTTTTGATGATGTTTGGTCGAAGATCAAGTCAACCATTAAAGATGTT
TTGAGGGATGTCAACACCAATGTATTCAATGAGATACATCATTGGGTTCGCGAGTCTTTCAACATGATCACATCATTTGCAATACCTACATTTCCTGAAG
CAACGGGGTCTTTTCCAATGGTAACAGATGCTGCCTCTAAACAACTATTCACTGGGCTGGTTCTCACCAAAAATATGGAGTTTGTTGATGATCTGCTGAC
TTTCGAAGAGCTTGGATCATATTTGAAATCTCAAGGATGCCATGTGGCTAACCTTTCCTCACTGGAGTTTTCAGTGAAAAACGGTATTGGTGGTTGTCTA
AGAAGTTTATTGAGACAGTTCTTAATGGTTACTGTAGATGCAGCTGATGTATCCATCTTAGCAACATGGTACAGAGAACAAGGAAGCTGTAATTATCCAG
TGGTCATAATAATAGAGGATATGGAGCGATGTAGTGGGTCTGTCTTGTCTGACTTCATCCTCATGTTAAGTGAATGGGTGCTTAAAATCCCAGTGGTTTT
AATAATGGGAGTTGCAACAACTCTTGATGCTCCTAAAAGTATACTTCAGTCAAATGCGCTCCACCATTTGTGCCCTTGTAAATTCATTTTGGGAACTCCT
CCAGAGAGAATGGATGCTGTTGTTGAGGCTGTTCTTGTGAAGCAGTGTTCTGGATTCGGTATAAGCCACAAGGTGGCAGTTTTTATGAGAAATTATTTTG
TAAGCCAAGATGGAACTATAACATCTTTCATAAGAGCTTTAAAGTGTTTTCAGATAGCATGTGCTCAACATTTCTTCATGGAACCCCTGAGCTTCATGCT
CTGGTTTCTTCTTGGAGATGACAATCTGATGTTACAAGGTGAAAAGTGTGGATTGTCACCAGAATTGATGCTCAAGCATGCTTTGAACCTTCCATCTTAT
CAGTCTTATGGAAGAAATAAAATAGCCAAACAGCATGGCGAAACTTTAGTAAATGGTTTGGCAGAATTGAAGAAATTGCAGTGTCAATGGAGCATTGTGA
TTCTGTGTCTATATGAAGCTGGAAAGTGTGATAAAGTCACACTGTTAGACCTATTCTGCGAGGCCCTTGATCCTGAATCATTCAAGTCAAGGGCTCCTGA
CAATGGTGGGGGCTTAGAAAATGACTCTGGAGTATCTTCAAGTGATTGTTACAAGCATCAGCAATATCATACTACACGGAATAGTGGTTTTATTTGTCAG
GCAGTGCGAAAGTTGAGGGATCTTCCAGCAGTGCAGCTACGTAAGCTGCTGAAGGGTTGGGAAAAATATACTGTGAATGTCCCTCAGATTCATGACAAAG
TGAAGAAGTTGCTATCTGAAATGAAGTTTGAGGATGGCAAGAGTTTGGGGCAAGATTTAAGCACCATATCCAAGAGACATTCATCTCGTAAACATTTGAA
AATTGAAGACTCCAAAGCAGTAAATGAGAAAGCTGCAAAGCTATTAGAGAGCATGGTTAGGAACTATATGCAGCCCCTTGAGTGTGTACCTTTCCATGAA
ATTGTCTGCTTTAAGAATGTCAATGCACTTCAAACAGCTTTAATTGGAGACCCAAGAAGAAGGATTCAAGTCGATCTTCTGGATGTTCGGAACATCATAC
GGTGCAGCTGTTGCATTAGCAGTAGCAATTCACTATTGCCATCGATGCATGATTCCTCAATAATGTATACCTTGGCTCAAGAGCATGGTGATCTTATTAA
TCTTCATGACTGGTATCAATCTTTCAAATCAATAGTTATTTGCTTGAGCAATAAAGGGAAACATGGGTCAAACTATTCCCCGTCACTGAAGAAAAGGAAA
GCTACCACTGAACCTGCAAAGCCAAGTGAGGCATCAATTCAAGCACGTTTTTGTAGGGCAGTTACAGAGCTCCAGATTACAGGGCTACTTCGGATGCCTA
GCAAAAGACGGCCTGATTATGTGCAGAGAGTGGCCTTTGGACTTTAG
AA sequence
>Potri.013G077200.2 pacid=42811438 polypeptide=Potri.013G077200.2.p locus=Potri.013G077200 ID=Potri.013G077200.2.v4.1 annot-version=v4.1
MAPSATASESLSPSTTVDTTENNLQPFFVLHRARSRKSEKKPTGTWKTRRRIDLSPSLPKNGENLDAEKAEAWDDCRHVSIRMEAFDDVWSKIKSTIKDV
LRDVNTNVFNEIHHWVRESFNMITSFAIPTFPEATGSFPMVTDAASKQLFTGLVLTKNMEFVDDLLTFEELGSYLKSQGCHVANLSSLEFSVKNGIGGCL
RSLLRQFLMVTVDAADVSILATWYREQGSCNYPVVIIIEDMERCSGSVLSDFILMLSEWVLKIPVVLIMGVATTLDAPKSILQSNALHHLCPCKFILGTP
PERMDAVVEAVLVKQCSGFGISHKVAVFMRNYFVSQDGTITSFIRALKCFQIACAQHFFMEPLSFMLWFLLGDDNLMLQGEKCGLSPELMLKHALNLPSY
QSYGRNKIAKQHGETLVNGLAELKKLQCQWSIVILCLYEAGKCDKVTLLDLFCEALDPESFKSRAPDNGGGLENDSGVSSSDCYKHQQYHTTRNSGFICQ
AVRKLRDLPAVQLRKLLKGWEKYTVNVPQIHDKVKKLLSEMKFEDGKSLGQDLSTISKRHSSRKHLKIEDSKAVNEKAAKLLESMVRNYMQPLECVPFHE
IVCFKNVNALQTALIGDPRRRIQVDLLDVRNIIRCSCCISSSNSLLPSMHDSSIMYTLAQEHGDLINLHDWYQSFKSIVICLSNKGKHGSNYSPSLKKRK
ATTEPAKPSEASIQARFCRAVTELQITGLLRMPSKRRPDYVQRVAFGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G16690 ORC3, ATORC3 origin recognition complex sub... Potri.013G077200
[exp]
0 1
AT2G31270 ATCDT1A, CDT1A,... ARABIDOPSIS HOMOLOG OF YEAST C... Potri.005G222700
[exp]
1.41 0.8506
AT1G08260 ESD7, EMB142, E... TILTED 1, EARLY IN SHORT DAYS ... Potri.004G185700
[exp]
1.41 0.8523
AT4G29910 EMB2798, ORC5, ... EMBRYO DEFECTIVE 2798, origin ... Potri.001G135975
[exp]
5.19 0.8386
AT1G14900 HMGA high mobility group A (.1) Potri.010G109600
[exp]
5.29 0.8306
AT1G63470 AT-hook AT hook motif DNA-binding fami... Potri.003G126500
[exp]
6.92 0.7582
AT1G57820 ORTH2, VIM1 VARIANT IN METHYLATION 1, ORTH... Potri.003G162400
[exp]
11.00 0.7659
AT3G51950 C3HZnF Zinc finger (CCCH-type) family... Potri.001G255532
[exp]
11.22 0.7553
AT1G79950 RAD3-like DNA-binding helicase... Potri.001G180200
[exp]
12.00 0.7973
AT3G17030 Nucleic acid-binding proteins ... Potri.010G144400
[exp]
13.03 0.7671
AT1G77720 PPK1 putative protein kinase 1 (.1) Potri.002G087600
[exp]
13.22 0.8028

Potri.013G077200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.