Plant FIBer expression Database

Potri.013G077700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27630 692 / 0 GTG2 GPCR-type G protein 2 (.1.2.3)
AT1G64990 667 / 0 GTG1 GPCR-type G protein 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G042201
[exp]
52 / 1e-08 AT4G27630 61 / 4e-13 GPCR-type G protein 2 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020351
[exp]
733 / 0 AT4G27630 766 / 0.0 GPCR-type G protein 2 (.1.2.3)
Lus10009531
[exp]
667 / 0 AT4G27630 719 / 0.0 GPCR-type G protein 2 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12430 ABA_GPCR Abscisic acid G-protein coupled receptor
PF12537 GPHR_N The Golgi pH Regulator (GPHR) Family N-terminal
Representative CDS sequence
>Potri.013G077700.1 pacid=42811088 polypeptide=Potri.013G077700.1.p locus=Potri.013G077700 ID=Potri.013G077700.1.v4.1 annot-version=v4.1
ATGGGTTGGGGATTGGGGGCCATATTTGAAGGAATAGTGGTGGTAGGATCACTGTGTCTATTAGGATGGGCAGGTCTTTGGTTCTTAAACAGAAGACTCT
ACAAAGAATACGAAGAGAAAAGAGCATTGGTTCAGATCATTTTCAGTGTTGTTTTTGCTTTCTCTTGCAATCTCCTTCAACTTGTCCTCTTCGAAATCAT
CCCTCTCCTCTCCAAACAGGCAAGATGGATAAATTGGAAGGTGGATCTGTTTTGTTTAATATTGTTACTTGTCTTCATGTTGCCGTATTATCACTGCTAC
TTGATGCTTCGCAACAACGGCGTGAGGAGGGAAAGGGCTGCACTCGGAGCCATCATATTCTTGTTTGCCTTTCTCTATGCTTTTTGGCGCATGGGCGTTC
ACTTCCCCATGCCTTCGCCTGATAAAGGTTTCTTCACAATGCCTCAGCTAGTCAGCAGAATTGGGGTTATTGGTGTCACTGTTATGGCTGTTTTGTCTGG
TTTTGGAGCTGTGAATTTACCCTACAGTTATTTATCTCTCTTCATTAGAGAAATTGGGGATTCAGAGATCAAAGCCTTGGAAAGACAATTAATGCAATCC
ATTGAGACTTGTGTTGCGAAGAAAAAGAGGATTGTCCTTTCTCAAATGGAGATGGAACGAATCCAGGGATCGGAGGAGAAGTTAAATGCTAGATCTTTCT
TCAAACGGATAGTTGGCACAGTTGTACGATCCGTGCAAGATGATCAAAAGGAGCAAGATATCAAAACCATGGAAGCAGAGGTTGAAGCCTTAGAAGAGCT
TTCAAAGCAGCTATTTTTGGAAATATATGAGCTTCGCCAAGCTAAGGAGGCAGCTGCTTTTTCTCGAACTTGGAGGGGTCACATGCAGAATTTACTTGGC
TATGCATGTTCTGTTTATTGTGTGTACAAGATGATTAAGTCTTTGCAAAGTGTTATATTCAAGGAGGCTGGCTCAGTTGATCCTGTGACAAGGACTATTA
GCTTATTTTTGCAGTTCTTTGACATAGGAATTAATGCTGCATTATTATCGCAGTACATTTCCCTACTATTCATTGGCATCTTGGTCGTCATATCAGTTCG
AGGATTTTTAACTAATCTCATGAAGTTCTTCTTTGCCGTTTCCAGAGTTGGGAGTGGATCTTCAAGCAATGTTGTACTTTTTCTGTCTGAAATTATGGGA
ATGTACTTTGTCTCTTCTATACTTTTGATAAGAAAAAGCTTAGCAACTGAGTACAGGATAACCATAACAGCTGTCTTGGGTGGAGAAATTCAGTTTGACT
TCTATCACCGGTGGTTTGATGCGATCTTTGTAGCAAGTGCTTTCCTTTCTCTTCTTTTGCTTTCTGCACATTACACGTCTCGCCAGGCTGACAAACACCC
AATTGATTGA
AA sequence
>Potri.013G077700.1 pacid=42811088 polypeptide=Potri.013G077700.1.p locus=Potri.013G077700 ID=Potri.013G077700.1.v4.1 annot-version=v4.1
MGWGLGAIFEGIVVVGSLCLLGWAGLWFLNRRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPLLSKQARWINWKVDLFCLILLLVFMLPYYHCY
LMLRNNGVRRERAALGAIIFLFAFLYAFWRMGVHFPMPSPDKGFFTMPQLVSRIGVIGVTVMAVLSGFGAVNLPYSYLSLFIREIGDSEIKALERQLMQS
IETCVAKKKRIVLSQMEMERIQGSEEKLNARSFFKRIVGTVVRSVQDDQKEQDIKTMEAEVEALEELSKQLFLEIYELRQAKEAAAFSRTWRGHMQNLLG
YACSVYCVYKMIKSLQSVIFKEAGSVDPVTRTISLFLQFFDIGINAALLSQYISLLFIGILVVISVRGFLTNLMKFFFAVSRVGSGSSSNVVLFLSEIMG
MYFVSSILLIRKSLATEYRITITAVLGGEIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSRQADKHPID

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27630 GTG2 GPCR-type G protein 2 (.1.2.3) Potri.013G077700
[exp]
0 1
AT3G51390 DHHC-type zinc finger family p... Potri.007G060100
[exp]
9.00 0.8406
AT5G04930 ALA1 aminophospholipid ATPase 1 (.1... Potri.008G014400
[exp]
9.48 0.8044
AT1G08350 Endomembrane protein 70 protei... Potri.004G203200
[exp]
13.07 0.8030
AT5G23340 RNI-like superfamily protein (... Potri.006G238300
[exp]
17.08 0.7497
AT4G32750 unknown protein Potri.018G038600
[exp]
35.49 0.7540
AT2G43040 NPG1 no pollen germination 1, tetra... Potri.002G055200
[exp]
35.63 0.8198 Pt-NPG1.1
AT1G20540 Transducin/WD40 repeat-like su... Potri.005G249800
[exp]
49.95 0.8117
AT3G25800 PP2AA2, PR65, P... protein phosphatase 2A subuni... Potri.008G118500
[exp]
53.94 0.8083
AT1G49340 ATPI4K ALPHA, A... Phosphatidylinositol 3- and 4-... Potri.009G113700
[exp]
54.47 0.8103 Pt-ALPHA.12
AT2G04940 scramblase-related (.1) Potri.015G079500
[exp]
54.77 0.7544

Potri.013G077700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.