Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16680 537 / 7e-166 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G02890 432 / 8e-131 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G43770 97 / 1e-20 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G17850 72 / 6e-14 unknown protein AT5G61100 65 / 5e-11 unknown protein AT5G61110 50 / 1e-06 zinc ion binding (.1) AT5G09790 50 / 9e-06 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT3G01460 50 / 2e-05 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G77250 46 / 0.0002 RING/FYVE/PHD-type zinc finger family protein (.1) AT5G24330 45 / 0.0003 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G041900 [exp] 1315 / 0 AT5G16680 288 / 6e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G091000 [exp] 179 / 4e-45 AT3G02890 177 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.007G110400 [exp] 100 / 1e-21 AT1G43770 135 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G173200 [exp] 99 / 3e-21 AT1G43770 187 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G189400 [exp] 86 / 7e-17 AT1G43770 142 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.014G040100 [exp] 71 / 6e-12 AT5G61120 127 / 1e-31 unknown protein Potri.013G011400 [exp] 50 / 2e-05 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.003G126600 [exp] 49 / 3e-05 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.005G021000 [exp] 49 / 4e-05 AT3G05670 436 / 2e-140 RING/U-box protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020350 [exp] 867 / 0 AT3G02890 439 / 2e-131 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10009530 [exp] 766 / 0 AT5G16680 395 / 5e-115 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028603 [exp] 83 / 7e-16 AT1G43770 106 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035396 [exp] 56 / 2e-07 AT5G61120 76 / 4e-15 unknown protein Lus10030998 [exp] 53 / 1e-06 AT5G61120 71 / 1e-13 unknown protein Lus10030864 [exp] 46 / 0.0003 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10008796 [exp] 46 / 0.0003 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10008495 [exp] 45 / 0.0007 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.013G077900.1 pacid=42811771 polypeptide=Potri.013G077900.1.p locus=Potri.013G077900 ID=Potri.013G077900.1.v4.1 annot-version=v4.1 ATGGCAGCCAAGCGAAGAGGAAGGAACGTCCAAGAGTTGTATAACGCGACGGAGATAATTGGGGAACCAAAGATCACGTCAGTGTTGAGGGAGGGTCATC GTATGGAAGGGCCATTAGACAAAACTCAGAAGAAGTATATGGAACCATCACAGGCTGAAAAAGGATTAGGCAAGCCTTCGATGAGACGGAAGGTTCGTAT GAGAGCTGAGTCTGGGACTTGTAACGTGTGCTCCGCTCCTTGTTCATCTTGTATGCATCTTAAGCTAGCCTGTATGGGATCAAAGGGTGATGAGTTTTCT GATGAAACCTGTCGTGTAACTGCATCAAGTCAGTATTCTAATAATGATGGTGATGGTATAGTCTCTTTTAAAAGTAGAGCACGTGACAGCTTACAGCATA CCACTAGCGAAGCAAGCAACTTGCTCAGTGTCAGTTCAAGTCATGACTCTCTGTCTGAAAATGCGGAAAGTAAAGCAAACATAAGGTCAACTGATGCTGA TGCCTCAGCCGAGTCTCAGATGCTTCCGAAATTGTCCTCTGGTAGAGCTGTTGCCGAGGATCATTTTTCTCCAAAACCACAGTGTCTTTCAGATCAGAAA ACTCTCTCAAAGAAGCACGGGGATCCTAAATCTGAAGAGGGCCAAGATGATACCATATCATGTGTTAGTAGAGCTAGTGATGCAAGCAAAGTGGTTAGTT ATCCTAAGAAGAATTTAGACAGGGATAATTTATTGCGCAGTTCAGCTTTAGAAGTGGAAGGATCTGGAAAGGCACTAGTTTCTCACAATTCAGGCTCATT GGAGACTCCTTCAAATGATGCTGATGCTGGTAGTAGCTCACCAAAGGTCCAGACTAAGTGCCTTTCCTTGAATGCAAATGGTAAATGTCTCGATGAACAT CCATCATTACATGACCATGGAAAACCATTTGAATGCCCAATGGAACAAGTTAACCTGTCATTGTCAAAAGAAGCAGCATCTAATATTGATTGTGGTGGCA ACTTGGCTGCACATAACAATGCAGATAACCATGCAAATGGTAAAAGTACCATTAATGCTGAGAGTTCCAAGGTTTCATGTAAAATCTATTCAAAATTAGA ACTGGAGGCTGACAAGGATAGTGGAGACCAATCAAATGAGGGTTTTAAAGGTTCTGAGCAAGTTGGACGAGAAGAGAAGTTGAATGATTTGGAGGAGTTA ACAGATATGCAGGAGATTCATTTGCAATCTGCATCCATGGACGAGAGTGACGAGTCTGAAATTCTGGAACATGATGTAAAAGTATGTGATATTTGCGGGG ATGCAGGTCGAGAGGATTTGCTTGCTATATGTAGTAGGTGCACTGACGGTGCAGAACACACCTATTGTATGCGAGACATGCTTCAGAAAGTTCCTGAAGG TGATTGGCTATGTGAAGAATGCAAGTTGGCTGAGGAAACTGAAAATCAAAAGCCAGATGCTGAGGAAAAAAGAATGAATAGTACACAAAGCTCTGGCAAG AGACAGGCAGAAACTATAGAGCTGGTTCCAGTACCCAAAAGGCAGGCTACTGAATCAAGCTTGGCATCACCCAAGTCATGCAGTCCTAGCAGAATAGCTG CATTATCTCGGGATACTTCATTCAAGAGCTTAGATAAGGGAAAAGTAAAGATAGCTCATCAAACTTATTTTGGAAATCGCTTAAGTATTGATATTCGGGA AACTGCTCACCCTTCTCTGAATGGTTCACGTGTTCAAACCCCCAAGGGTACCTTGTTGAAATCCAACTCGTTCAACACCGTAAATTCCAAACCGAAAGTG AAACTTGTCAATGAATTTCCTCAAAAGCACAAGGGGACCAGAGAGAGTTCTCTTGATATGAAGGAGAGGCCTGCTAGAATGATGAGTAAATCTATGTCAT TTAAATCTGTGAACTCAGGCCGATCTGTCACGATTGAATCAAAAGGTAAAATGATTTCATCCAAATATTCTCACACTCAAGATGCAAGAGGGTTAAAACA AGTGAAAGACCAGAATGCAATTGATAGAAAAAACTTGTTGAGGCTGGATCGCCCTTTAGGTAGCTCAATGCCAAATAGTGCTGTTTCAACACCTAAGGTT GATCAAAGGATCACTCCTCGTGGTGAAAGTGCCATAGCATCATCCCCAAGCATCAACAGAGAGTTGAAGTCCACACAGTCTGATGGAAAATTGGGTACCT TATCAAGATCAACTAGTGTGGGTCGTAAAAGTGCAGATATCCCAGGTACTTCAGTTCGAGTTTCATCTACACATGGAATTAGCAGTTCTTCTGTGGAACA AAAATCGAACCAAATTAGCCCTAAAGATGAACCATCGTCCAGTTCCTGGAATGCTGAGAGACAGCTCAATAATGCTAATGAAAATTTGCAAGATGGCTTA CCTCAATCACGGGAATCATCAAATCAAGGTGAAAAGGTTAGGGAAAGTTCTGTCAGTCACTTGAGGCCTGCTGGTACCACTGGGTTGAAAATTGTCACTT GTCAAAAGTGCAAGGAAGTCGGTCATGCTACAGAAAATTGCACTGTTGTTAGTCCTATGGCCTCTGGTACTGATTTACCTATTTCTAGAACTGCCAGAGA GGGGATGAGCAAAGGTAGTAAATTGAAAGCTGCAATTGAGGTTGCTATGCTTAAGAGGCCTGGAATATACAGAAAGAAAAAAGAAAGTGATCAATCTGAT GGGGTATCCTTGCTAAATGTGGATGCAAGTAGCGAGATTCAAGATCAGTTCTCAGTTTTAAATAAGATGAATGAAGGAACACTTGAAAGGCAAGCAAATC ATGGTGCTTCTTCCTCTGAGTTCAGCAAATCAACAAATATTAATAACGTGAAGCAGCTTAATGAGCACTCCACTGATACTGTTTATCCTTCCAAGGTGGG GCAATTGGATTTCATTGCCCCATATTTGGGAAAGCCTGCACATACTTCAGTGGAGAAGTCTGTCCTTATGAAGATGTCTGCCATCCCAGAGCATGAATAT ATCTGGCAGGGGGTGCTTGAAGTGCATAGATCTGAAAAATTTATCGACTTATATGGTGGAATTCAAGCACATCTATCGACTTGTGCATCACCTAAAGTCC ATGACATGGTCAACAAGTTTCCCCAGAATATTAACTTGGATGAAGTACCTCGCTTAAGCACATGGCCAAGACAATTCCACATCAGTGGTGCTAAAGAGGA AAATATTGCACTTTACTTCTTTGCCAAGGATTTTGAAAGTTACGAGAACTACAAGGGATTGTTGGACAACATGATTAAAAAGGATCTGGCCCTGAAAGGA TCATTTGGTGGTGTTGAATTCTTCATATTCCCATCCACTCAGCTTCCAGAGAACTCCCAGCGTTGGAACATGTTGTATTTCTTGTGGGGAGTGTTCAGGG GAAGGAGATCTGAATCAAATTCATTTAAGAAGTTAGTTATTCCCAGTTTGAATGTGGTGCCCAGGGACAAAGACATTCCTGCTGCAGTCTTGTCTTCACC TGAGAATCTCTGCCCATCTGAATGTATTGTTAAAGAAACATCTGCATGTGACAGTTCTTGTGATGTGCCTCTTACATCAAATGCTCCTGAAAAGCCATGT GTGTCCTTAAACAGGAATTCTGATAACAAAGTATTTAATTCACAAACGATCCAAGAGAGTCAAGATGGGAAGCTTGACTCCAAATCCGTGCCAAAGATTC CAGGAAGCAATACCCCATGGTGCCCAGAAGTTAGACGCAGCAGTTCTTCCCTGGAAGAAGTTGGTCATCCTGAGTGCAGTATGGATGTGGAGTTTAAATC TTGTGCTGAGGTAACTGGAACTAATTCTAGCTCTGATGTGGTGGAGATACAAATGCATGAAGGTACTTCATGTTTTGGAGAAGGTATGCCATCTCTCAAG ATTTTTGGTGTTGGTAGTCAAGATTCAGGTGGCAGGACGACTTTTGGTGAGGAAAAAATAGTTGATAGAACATACTGTGATAGAAATAATGTTAAAGTTG AAACGGACTTGAATGAAGAGAATGTGAATCTGGATGTGGAGGCTTCTTCAGAGAAAACCCCAAGGAAACGACCATATATTGATCTGTCAGAGACTGCACC ACTGACTTCGAGTAGCGTGACTCATAAAGCTCTGTGGAATAAGGCAGATAATAACAAGTTAGTAGATGGAGAGAGTATTAGGAAGAAGCTCAAGACGGGT TTCAGGGAACTATATGGGGGTAGTGGTTCAAGAGATGGAAATTCTTTGAGTGGTAGTTTTACTTCTCAGACATGTGATTTGGGTTCCAGCTCCTCAATTG AGGAGAAGAGCTATGACAAAGCATCTGATGAAAAAGTTATCTTGGAGGACCTAGGAACTAGTGAAAGGTTCTTCTTTCCTGTGGATTCACATCGTGTCAA GGATATTTGGTTGCCTGGTAACTCCATGCCCTGGAACTCATCAAATGATGAGGATAAAGTTCATGATGGGATTCCAAATCTCGAGCTTGCCTTGGGGGCT GAGACAAAATCCCCTAATAAGGGAATCCTGCCTTTCTTCGGATTGGTAGAGAAAAATGATAACCAGAACAAGCCCCCAGACAAGGTGTTGAATAAGGAAG AAGACGATGGCGTCTCTGCTTCCCTCTCCCTTTCCCTCTCATTCCCATTTCCAGACAAGGAACAAACTGTTAAACCTGTTTCAAAAACAGAGCAGCTTGT GCCTGAAAGGCGTCATGTGAATACTTCACTGCTCCTTTTTGGGGACCTTTCAGATAAATAG
AA sequence Show only first row Show all	>Potri.013G077900.1 pacid=42811771 polypeptide=Potri.013G077900.1.p locus=Potri.013G077900 ID=Potri.013G077900.1.v4.1 annot-version=v4.1 MAAKRRGRNVQELYNATEIIGEPKITSVLREGHRMEGPLDKTQKKYMEPSQAEKGLGKPSMRRKVRMRAESGTCNVCSAPCSSCMHLKLACMGSKGDEFS DETCRVTASSQYSNNDGDGIVSFKSRARDSLQHTTSEASNLLSVSSSHDSLSENAESKANIRSTDADASAESQMLPKLSSGRAVAEDHFSPKPQCLSDQK TLSKKHGDPKSEEGQDDTISCVSRASDASKVVSYPKKNLDRDNLLRSSALEVEGSGKALVSHNSGSLETPSNDADAGSSSPKVQTKCLSLNANGKCLDEH PSLHDHGKPFECPMEQVNLSLSKEAASNIDCGGNLAAHNNADNHANGKSTINAESSKVSCKIYSKLELEADKDSGDQSNEGFKGSEQVGREEKLNDLEEL TDMQEIHLQSASMDESDESEILEHDVKVCDICGDAGREDLLAICSRCTDGAEHTYCMRDMLQKVPEGDWLCEECKLAEETENQKPDAEEKRMNSTQSSGK RQAETIELVPVPKRQATESSLASPKSCSPSRIAALSRDTSFKSLDKGKVKIAHQTYFGNRLSIDIRETAHPSLNGSRVQTPKGTLLKSNSFNTVNSKPKV KLVNEFPQKHKGTRESSLDMKERPARMMSKSMSFKSVNSGRSVTIESKGKMISSKYSHTQDARGLKQVKDQNAIDRKNLLRLDRPLGSSMPNSAVSTPKV DQRITPRGESAIASSPSINRELKSTQSDGKLGTLSRSTSVGRKSADIPGTSVRVSSTHGISSSSVEQKSNQISPKDEPSSSSWNAERQLNNANENLQDGL PQSRESSNQGEKVRESSVSHLRPAGTTGLKIVTCQKCKEVGHATENCTVVSPMASGTDLPISRTAREGMSKGSKLKAAIEVAMLKRPGIYRKKKESDQSD GVSLLNVDASSEIQDQFSVLNKMNEGTLERQANHGASSSEFSKSTNINNVKQLNEHSTDTVYPSKVGQLDFIAPYLGKPAHTSVEKSVLMKMSAIPEHEY IWQGVLEVHRSEKFIDLYGGIQAHLSTCASPKVHDMVNKFPQNINLDEVPRLSTWPRQFHISGAKEENIALYFFAKDFESYENYKGLLDNMIKKDLALKG SFGGVEFFIFPSTQLPENSQRWNMLYFLWGVFRGRRSESNSFKKLVIPSLNVVPRDKDIPAAVLSSPENLCPSECIVKETSACDSSCDVPLTSNAPEKPC VSLNRNSDNKVFNSQTIQESQDGKLDSKSVPKIPGSNTPWCPEVRRSSSSLEEVGHPECSMDVEFKSCAEVTGTNSSSDVVEIQMHEGTSCFGEGMPSLK IFGVGSQDSGGRTTFGEEKIVDRTYCDRNNVKVETDLNEENVNLDVEASSEKTPRKRPYIDLSETAPLTSSSVTHKALWNKADNNKLVDGESIRKKLKTG FRELYGGSGSRDGNSLSGSFTSQTCDLGSSSSIEEKSYDKASDEKVILEDLGTSERFFFPVDSHRVKDIWLPGNSMPWNSSNDEDKVHDGIPNLELALGA ETKSPNKGILPFFGLVEKNDNQNKPPDKVLNKEEDDGVSASLSLSLSFPFPDKEQTVKPVSKTEQLVPERRHVNTSLLLFGDLSDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	0	1
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.019G041900 [exp]	1.41	0.9089
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Potri.015G041500 [exp]	3.16	0.8800
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Potri.006G153100 [exp]	4.00	0.8739
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Potri.010G233500 [exp]	4.47	0.8813
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.001G123400 [exp]	7.34	0.8883
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Potri.017G072460 [exp]	8.94	0.8544
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.008G014100 [exp]	9.16	0.8757
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.014G051500 [exp]	10.09	0.8240
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.002G159900 [exp]	12.48	0.8777	Pt-CRP.3
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.017G073900 [exp]	14.07	0.8475

Compare expression of checked genes

Potri.013G077900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.