Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2) AT1G32700 276 / 1e-94 PLATZ transcription factor family protein (.1.2) AT1G21000 226 / 1e-74 PLATZ transcription factor family protein (.1.2) AT5G46710 219 / 5e-72 PLATZ transcription factor family protein (.1) AT1G76590 212 / 5e-69 PLATZ transcription factor family protein (.1) AT1G43000 204 / 2e-66 PLATZ transcription factor family protein (.1) AT2G27930 155 / 1e-47 PLATZ transcription factor family protein (.1) AT2G12646 132 / 2e-37 PLATZ transcription factor family protein (.1) AT3G60670 125 / 6e-35 PLATZ transcription factor family protein (.1) AT1G31040 120 / 3e-33 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G051200 [exp] 426 / 1e-153 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 308 / 6e-107 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.003G092800 [exp] 302 / 7e-105 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 232 / 8e-77 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.005G259000 [exp] 231 / 2e-76 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.016G097100 [exp] 209 / 3e-68 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.006G119400 [exp] 204 / 1e-66 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.009G003200 [exp] 192 / 1e-61 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.001G212400 [exp] 191 / 5e-61 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020337 [exp] 298 / 3e-102 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 292 / 2e-100 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 287 / 2e-98 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10000482 [exp] 275 / 2e-93 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2) Lus10004577 [exp] 270 / 6e-92 AT4G17900 287 / 6e-99 PLATZ transcription factor family protein (.1.2) Lus10000952 [exp] 223 / 5e-73 AT1G21000 347 / 5e-122 PLATZ transcription factor family protein (.1.2) Lus10002700 [exp] 220 / 3e-71 AT1G21000 345 / 1e-120 PLATZ transcription factor family protein (.1.2) Lus10027735 [exp] 206 / 6e-67 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10023411 [exp] 207 / 2e-65 AT1G21000 313 / 7e-107 PLATZ transcription factor family protein (.1.2) Lus10040292 [exp] 203 / 2e-65 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [poplar] [flax] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Potri.013G078500.3 pacid=42812556 polypeptide=Potri.013G078500.3.p locus=Potri.013G078500 ID=Potri.013G078500.3.v4.1 annot-version=v4.1 ATGATCATTAATGACCAAGAAAGCACCACTGTGAGAGAAATCAAACCCAACATCAGAAGAATCATGGGAGGTGGTAGTCCAGATTATGTTGATGATCATA AAGAAGATATCAAGTGGCCACCATGGCTGCATACACTTCTCCAAACAAGCTTTTTTGTTCAATGCAAGCTTCATTCTGATGCTCACAAGAGTGAATGCAA TATGTATTGCTTGGATTGCATGAACGGTGCCCTTTGTTCTGTTTGTCTCTCACACCACAAAGACCATAGAGCTATCCAGATAAGGAGGTCATCTTACCAT GATGTGATTAGGGTGTCTGAAATTCAGAAATACTTGGACATAACAGAGGTCCAGACCTACATCATCAACAGTGCAAAAATTGTGTTCTTGAATGAGAGGC CTCAGCCTAGGCCTGGTAAAGGTGTTACCAACACTTGCCATGTCTGTGAGCGCAGCCTCCTTGATTCATTCAGCTTCTGCTCTCTTGCTTGCAAGATTGT TGGGACATCAAAGAATTTCAGGAAGAAGAAAAGGTACAAGGAGATGGATGGTCCAGACACTGAAAAATCAATGAGTGGCATCAGCAACGGAAGTGCTAAA AGCAAAGCACAAAGCTTTACACCCTCAACCCCACCGCCAACTGCGATGAATTATAGGACTGCCAAGAGAAGAAAGGGAGTTCCACAGAGATCTCCAATGG GAGGATTCATCATAGAATACTAG
AA sequence Show only first row Show all	>Potri.013G078500.3 pacid=42812556 polypeptide=Potri.013G078500.3.p locus=Potri.013G078500 ID=Potri.013G078500.3.v4.1 annot-version=v4.1 MIINDQESTTVREIKPNIRRIMGGGSPDYVDDHKEDIKWPPWLHTLLQTSFFVQCKLHSDAHKSECNMYCLDCMNGALCSVCLSHHKDHRAIQIRRSSYH DVIRVSEIQKYLDITEVQTYIINSAKIVFLNERPQPRPGKGVTNTCHVCERSLLDSFSFCSLACKIVGTSKNFRKKKRYKEMDGPDTEKSMSGISNGSAK SKAQSFTPSTPPPTAMNYRTAKRRKGVPQRSPMGGFIIEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17900			PLATZ transcription factor fam...		Potri.013G078500 [exp]	0	1
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.016G031400 [exp]	3.31	0.7810
					Potri.005G123850 [exp]	4.00	0.7680
AT2G24762		ATGDU4	glutamine dumper 4 (.1)		Potri.004G108680 [exp]	4.24	0.8068
AT2G31945			unknown protein		Potri.001G230900 [exp]	10.00	0.8014
AT4G21865			unknown protein		Potri.010G065666 [exp]	10.67	0.7955
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G209400 [exp]	10.95	0.7700
AT2G41640			Glycosyltransferase family 61 ...		Potri.006G048500 [exp]	13.49	0.7734
AT3G11410		ATPP2CA, AHG3	ARABIDOPSIS THALIANA PROTEIN P...		Potri.010G199600 [exp]	32.49	0.6986
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Potri.001G167100 [exp]	34.35	0.7815	ALDH7.1
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Potri.014G128600 [exp]	35.62	0.7009	ATMHX.1

Compare expression of checked genes

Potri.013G078500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.