Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27600 588 / 0 NARA5 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) AT1G19600 77 / 2e-15 pfkB-like carbohydrate kinase family protein (.1) AT5G03300 53 / 2e-07 ADK2 adenosine kinase 2 (.1) AT1G66430 49 / 3e-06 pfkB-like carbohydrate kinase family protein (.1) AT4G10260 47 / 1e-05 pfkB-like carbohydrate kinase family protein (.1) AT5G51830 47 / 2e-05 pfkB-like carbohydrate kinase family protein (.1) AT5G58730 46 / 3e-05 pfkB-like carbohydrate kinase family protein (.1) AT3G09820 45 / 5e-05 ADK1, ATADK1 adenosine kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G229100 [exp] 82 / 1e-16 AT1G19600 558 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.002G034000 [exp] 74 / 4e-14 AT1G19600 556 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.010G224300 [exp] 54 / 1e-07 AT5G03300 620 / 0.0 adenosine kinase 2 (.1) Potri.008G038100 [exp] 52 / 5e-07 AT5G03300 622 / 0.0 adenosine kinase 2 (.1) Potri.012G132700 [exp] 51 / 8e-07 AT5G51830 460 / 1e-163 pfkB-like carbohydrate kinase family protein (.1) Potri.015G134900 [exp] 49 / 4e-06 AT5G51830 456 / 1e-161 pfkB-like carbohydrate kinase family protein (.1) Potri.004G089300 [exp] 48 / 1e-05 AT1G66430 527 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Potri.019G063600 [exp] 47 / 2e-05 AT4G10260 550 / 0.0 pfkB-like carbohydrate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026867 [exp] 621 / 0 AT4G27600 585 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Lus10013645 [exp] 618 / 0 AT4G27600 580 / 0.0 GENES NECESSARY FOR THE ACHIEVEMENT OF RUBISCO ACCUMULATION 5, pfkB-like carbohydrate kinase family protein (.1) Lus10007397 [exp] 72 / 1e-13 AT1G19600 518 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10024268 [exp] 72 / 3e-13 AT1G19600 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10031668 [exp] 50 / 3e-06 AT5G51830 522 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10023197 [exp] 49 / 5e-06 AT5G03300 590 / 0.0 adenosine kinase 2 (.1) Lus10027401 [exp] 49 / 5e-06 AT5G51830 535 / 0.0 pfkB-like carbohydrate kinase family protein (.1) Lus10023532 [exp] 48 / 9e-06 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10040417 [exp] 45 / 8e-05 AT5G03300 599 / 0.0 adenosine kinase 2 (.1) Lus10023021 [exp] 44 / 0.0003 AT5G03300 546 / 0.0 adenosine kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [poplar] [flax] Ribokinase PF00294 [poplar] [flax] PfkB pfkB family carbohydrate kinase
Representative CDS sequence Show only first row Show all	>Potri.013G078600.1 pacid=42811230 polypeptide=Potri.013G078600.1.p locus=Potri.013G078600 ID=Potri.013G078600.1.v4.1 annot-version=v4.1 ATGTCATCTTTCTCTCTTGTCTCTCCTCCAACCATCCCTCATCCTCACATCATAACCAGACATCCACCAACTCCTTCTTCTCCTATTTTCTCTCTTTATC GCAACCCTTTATCTCTACATGCCCACAACACCACACCAACCAATCTTTCTTCTCCTTATGGACCAATACAGACCTCTAAACTTGATACTGTGGCCAAAAC CTCACGTGGGTCTTTTAGGATTTCTTCTCTTTCCAACATTGAAAGAGAATTAGGGACTGGAAGCCAAGATGACGAAGAAGAGGAAATAGAGGGCGTAAGT CCAACTTCTGTTTTGCCTGACAGATGGGATGTTTTGGGTCTTGGTCAAGCTATGGTGGATTTCTCTGGCACTGTTGATGATGAATTTTTGAAAAGATTAG GATTAGAGAAGGGAACAAGGAAGGTTGTGAACCATGAGGAGAGGGGTAGAGTTTTGCGGGCCATGGACGGTTGCAGCTACAAGGCAGCTGCTGGTGGATC TCTTTCAAACAGCCTGGTAGCCCTGGCAAGGCTTGGTTGTAAATCCGTAGGAGGCCCTGCCCTAAATGTAGCCATGGCAGGCAGTGTAGGGAGTGATCCA TTGGGAGGCTTCTACAGATCAAAATTACAGAGGGCAAATGTGAATTTTCTCTCTGAACCTGTGAAAGATGGGACAACAGGAACAGTGATAGTTCTCACAA CCCCTGATGCACAGCGAACCATGCTCGCACATCAGGGTACATCTTCAACTGTTAACTATGATCCATGCTTGGCCAGCATAATTTCCAAGACGAAGATACT GGTAGTTGAAGGCTATTTATTTGAACTTCATGATACAATTAAAACAATTTCAAAAGCATGTGAAGAAGCACGCAGGAGTGGTGCGCTGGTTGCAATTACA GCATCAGATGTGTCCTGCATTGAAAGACACTATGATGATTTCTGGGAAATTGCTGGAAACTGTGCCGATGTGGTGTTTGCAAACAGTGATGAAGCAAGAG CTTTATGTAATATTACTGCAAAGGATAGCTCAATTTCAGCTACAAGGTATCTTAGTCATTTTGTACCCTTGGTCTCGGTCACTGATGGGCATAGAGGATC CTATATTGGTGTAAAAGGAGAAGCTGTATATATCCCTCCTTCACCATGTGCACCTGTCGACACTTGTGGTGCTGGGGATGCATATGCATCTGGCATTTTG TATGGTATCCTACGGGGTGTGTCTGATTTGAGAGCAATGGGTACATTAGCAGCTCGAGTTGCAGCCACGGTTGTTGGACAACAAGGAACCCGGCTTAAAG TTCAGGATGCTGTTGAGCTAGTGGAGTCGTTTGCATTGCATTTTGAGCACTCTGCAATTGGCTCAGATATCGGTTCTGATCATATTTCCAGCTTGTAA
AA sequence Show only first row Show all	>Potri.013G078600.1 pacid=42811230 polypeptide=Potri.013G078600.1.p locus=Potri.013G078600 ID=Potri.013G078600.1.v4.1 annot-version=v4.1 MSSFSLVSPPTIPHPHIITRHPPTPSSPIFSLYRNPLSLHAHNTTPTNLSSPYGPIQTSKLDTVAKTSRGSFRISSLSNIERELGTGSQDDEEEEIEGVS PTSVLPDRWDVLGLGQAMVDFSGTVDDEFLKRLGLEKGTRKVVNHEERGRVLRAMDGCSYKAAAGGSLSNSLVALARLGCKSVGGPALNVAMAGSVGSDP LGGFYRSKLQRANVNFLSEPVKDGTTGTVIVLTTPDAQRTMLAHQGTSSTVNYDPCLASIISKTKILVVEGYLFELHDTIKTISKACEEARRSGALVAIT ASDVSCIERHYDDFWEIAGNCADVVFANSDEARALCNITAKDSSISATRYLSHFVPLVSVTDGHRGSYIGVKGEAVYIPPSPCAPVDTCGAGDAYASGIL YGILRGVSDLRAMGTLAARVAATVVGQQGTRLKVQDAVELVESFALHFEHSAIGSDIGSDHISSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Potri.013G078600 [exp]	0	1
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.008G012500 [exp]	1.41	0.9794	NAP7.2
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Potri.015G062100 [exp]	3.16	0.9797
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Potri.005G012900 [exp]	4.35	0.9601
AT5G58330			lactate/malate dehydrogenase f...		Potri.008G031700 [exp]	6.48	0.9737
AT3G54360			zinc ion binding (.1)		Potri.003G189400 [exp]	7.14	0.9617
AT4G25370			Double Clp-N motif protein (.1...		Potri.012G129800 [exp]	7.21	0.9670
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Potri.002G012000 [exp]	7.74	0.9655	FTSH2.2
AT3G10405			unknown protein		Potri.008G034900 [exp]	7.93	0.9652
AT3G20930			RNA-binding (RRM/RBD/RNP motif...		Potri.010G237200 [exp]	8.36	0.9657
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Potri.011G114300 [exp]	9.27	0.9407

Compare expression of checked genes

Potri.013G078600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.