Plant FIBer expression Database

Potri.013G078700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G42050 755 / 0 vacuolar ATP synthase subunit H family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G047800
[exp]
858 / 0 AT3G42050 703 / 0.0 vacuolar ATP synthase subunit H family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020335
[exp]
812 / 0 AT3G42050 744 / 0.0 vacuolar ATP synthase subunit H family protein (.1)
Lus10005658
[exp]
795 / 0 AT3G42050 724 / 0.0 vacuolar ATP synthase subunit H family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF03224 V-ATPase_H_N V-ATPase subunit H
CL0020 TPR PF11698 V-ATPase_H_C V-ATPase subunit H
Representative CDS sequence
>Potri.013G078700.2 pacid=42811287 polypeptide=Potri.013G078733.1.p locus=Potri.013G078700 ID=Potri.013G078700.2.v4.1 annot-version=v4.1
ATGGAGCAGGCCGAACTGACTACAGAGCAGGTTCTTAAGAGGGATATCCCATGGGAGACTTACATGATGACAAAGCTAATCTCTGGGACGGATCTTCAAC
TGTTGAGGCGTTATGATAATAGACCGGAAAGTTACAGGGCACAATTGTTAGATGATGATGGCCCAGCTTATGTTCGGGTTTTTGTTACCATTTTACGTGA
CATTTTTAAGGAAGAAACAGTCGAATATGTTCTGGCTTTGATTGATGAAATGCTTGCAGCAAACCCGAAAAGAGCCAGATTGTTCCATGATAAGTCTCTT
GCAAATGATGATCCTTATGAACCTTTCCTAAGATTGCTTTGGAAAGGTAACTGGTTCATACAAGAAAAGAGCTGCAAGATACTTGCTTTGATTGTAAGTG
CTAGGCCAAAAACTCAAGATGGCCTTCTTTCAAATGGAGAGGCCTCAAATTCAAAGAGCAAAATTACTTGCATTGATGATGTGCTGAAGGGATTGGTTGA
ATGGCTTTGTGCCCAGCTGAAGAAGCCTTCACATCCTAGTCGTTCCATTCCAACTGCAATTAGTTGTCTAGCAACATTGCTTAAGGAGCCTGTGGTCAGA
TCTTTGTTTGTACGGTTAGATGGCGTGAAGTTGCTGATTCCATCGATTTGTCCAGCATCTACTCAACAATCCATTCAGCTTCTTTATGAAACAAGTCTCT
GTGTCTGGCTACTATCTTACTATGAACCTGCAATCGAGTACTTGGCTACTTCAAGAACCTTGCCGCGACTAGTTGACGTTGTGAAGAGTTCCACAAAAGA
GAAGGTTGTCAGAGTGGTTGTCTTGACCTTTAAAAACTTGCTTTCCAAAGGTGCATTTGGTGCTCAGATGGTAGACCTTGGATTGCCACAAATTGTTCAA
AATTTGAAAGCACAAGCATGGAGTGATGAGGACCTACTGGAGGCTCTGAACCAACTAGAAGAGGGGTTAAAGGATAACATTAAGAAATTGAGTTCTTTTG
ACAAGTACAAGCAAGAAGTTCTCCTCGGCCATCTTGATTGGTCTCCTATGCACAAAGATCCTGCTTTCTGGCGTGAAAATATAACTAATTTTGAAGAGAA
TGATTTCCAGATTCTGAGGGTCCTCATCACAATTTTGGACACATCCAATGATCCAAGAGCTCTGGCTGTTGCTTGCTTTGATCTCTCGCAGTTTATCCAG
CACCATCCTGCTGGGAGGGTCATAGTGACGGATCTTAAGACCAAGGAAAGGGTGATGAAACTGATGAACCATGAAAATGCTGAAGTTACCAAAAATGCTC
TCCTCTGTATTCAAAGGCTCTTTCTAGGTGCAAAGTATGCAAGCTTTCTGCAGGTCTGA
AA sequence
>Potri.013G078700.2 pacid=42811287 polypeptide=Potri.013G078733.1.p locus=Potri.013G078700 ID=Potri.013G078700.2.v4.1 annot-version=v4.1
MEQAELTTEQVLKRDIPWETYMMTKLISGTDLQLLRRYDNRPESYRAQLLDDDGPAYVRVFVTILRDIFKEETVEYVLALIDEMLAANPKRARLFHDKSL
ANDDPYEPFLRLLWKGNWFIQEKSCKILALIVSARPKTQDGLLSNGEASNSKSKITCIDDVLKGLVEWLCAQLKKPSHPSRSIPTAISCLATLLKEPVVR
SLFVRLDGVKLLIPSICPASTQQSIQLLYETSLCVWLLSYYEPAIEYLATSRTLPRLVDVVKSSTKEKVVRVVVLTFKNLLSKGAFGAQMVDLGLPQIVQ
NLKAQAWSDEDLLEALNQLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDPAFWRENITNFEENDFQILRVLITILDTSNDPRALAVACFDLSQFIQ
HHPAGRVIVTDLKTKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G42050 vacuolar ATP synthase subunit ... Potri.013G078700
[exp]
0 1
AT3G49720 unknown protein Potri.009G082400
[exp]
1.00 0.9541
AT2G27020 PAG1 20S proteasome alpha subunit G... Potri.009G020800
[exp]
3.16 0.9380 PAG1.2
AT1G12840 ATVHA-C, DET3 DE-ETIOLATED 3, ARABIDOPSIS TH... Potri.017G061100
[exp]
3.31 0.9260
AT5G17310 AtUGP2, UGP2 UDP-glucose pyrophosphorylase ... Potri.004G074400
[exp]
3.74 0.9223
AT1G78870 UBC35 ,UBC13A UBIQUITIN CONJUGATING ENZYME 1... Potri.011G111400
[exp]
5.65 0.9282
AT1G26940 Cyclophilin-like peptidyl-prol... Potri.010G012900
[exp]
7.93 0.9366
AT4G11150 TUFF, EMB2448, ... embryo defective 2448, vacuola... Potri.013G051500
[exp]
8.77 0.9288
AT3G16060 ATP binding microtubule motor ... Potri.003G053800
[exp]
9.00 0.9278
AT4G02080 ASAR1, ATSARA1C... secretion-associated RAS super... Potri.010G141900
[exp]
9.59 0.9349 Pt-SAR1.2
AT3G09800 SNARE-like superfamily protein... Potri.001G197200
[exp]
10.24 0.9308

Potri.013G078700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.