Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16730 619 / 0 Plant protein of unknown function (DUF827) (.1) AT3G02930 585 / 0 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) AT1G65010 561 / 0 Plant protein of unknown function (DUF827) (.1) AT4G27595 495 / 1e-158 Plant protein of unknown function (DUF827) (.1) AT4G40020 79 / 6e-15 Myosin heavy chain-related protein (.1) AT2G37080 61 / 3e-09 RIP3 ROP interactive partner 3 (.1) AT5G55860 51 / 4e-06 Plant protein of unknown function (DUF827) (.1) AT4G33390 49 / 2e-05 Plant protein of unknown function (DUF827) (.1) AT3G53350 46 / 0.0001 RIP4 ROP interactive partner 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G047600 [exp] 1246 / 0 AT5G16730 608 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.007G096600 [exp] 114 / 3e-26 AT4G40020 205 / 6e-58 Myosin heavy chain-related protein (.1) Potri.005G072400 [exp] 106 / 2e-23 AT4G40020 219 / 3e-63 Myosin heavy chain-related protein (.1) Potri.006G131400 [exp] 73 / 5e-13 AT2G37080 473 / 1e-160 ROP interactive partner 3 (.1) Potri.016G085900 [exp] 66 / 6e-11 AT2G37080 474 / 2e-161 ROP interactive partner 3 (.1) Potri.001G369200 [exp] 52 / 1e-06 AT5G55860 516 / 4e-176 Plant protein of unknown function (DUF827) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020373 [exp] 825 / 0 AT5G16730 610 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10009550 [exp] 747 / 0 AT5G16730 571 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10016626 [exp] 62 / 2e-09 AT5G55860 577 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10022531 [exp] 62 / 2e-09 AT5G55860 573 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10000283 [exp] 59 / 2e-08 AT4G40020 190 / 6e-54 Myosin heavy chain-related protein (.1) Lus10023173 [exp] 51 / 3e-06 AT2G37080 315 / 2e-101 ROP interactive partner 3 (.1) Lus10026482 [exp] 49 / 2e-05 AT2G37080 435 / 7e-147 ROP interactive partner 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05701 [poplar] [flax] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Potri.013G079000.2 pacid=42811811 polypeptide=Potri.013G079000.2.p locus=Potri.013G079000 ID=Potri.013G079000.2.v4.1 annot-version=v4.1 ATGTCTTCGAAAACCAGATCTGGTTTGTCTGAAACTCCTAGCAAACCATCACCAGCAACTCCTAGAGTTAGTAAACTGAGCCGAGGAGTGGCTAAATCAG AGTCTGATTCACCATCGCCCTTGCAAAGTTCACGTCTTTCAGTTGACCGATCACCGCGATCCATTAACTCAAAGCCCACAATTGATCGACGGGCACCAAA GGTCACTACTGCTACACCCCCTGAAAAACCAAAGACACGAGTGGTGAAGGGTTCAGAGTTGCAGGCTCAATTGAATGCTGTTCAGGAAGATTTAAAGAAA GCAAGGGAACAGATAGAATTTATTGAAAAAGAGAGGGCACAAGCAATTGATGAACTGAAACAGGCACAGAAAGCTGCTGAGGATGCAAATGAGAAGCTTC AAGAAGCTTTGGTGGCGCAAAAGCGAGCCGAGGAGAATTCTGAGATTGAGAAGTTCCGAGCTGTTGAGTTGGAACAGGCTGGGATTGAGGATGCCCAGAA GAAGGAAGAGGAATGGCAGAAAGAGCTTGAAGCTGTAAGAAGCCAACATGCTTTGGATGTTACCGCCCTTCTCTCTACCACTCAGGAGCTTCAAAGGTTG AAACAAGAACTGGCTATGATTACTGATGCAAAGAACCAGGCACTGAGCCACGCTGATGACGCAACTAAGATTGCTGAGATTCATGCAGAGAAGGTGGAGA TGCTTTCATCTGAGTTGACCCGGTTGAATGTATTACTTGATTCAAAGCTTGAAACAGAGGCCATTGAAAGCAACAAGATAGTGTTGCAGCTTAATGAGGA GATAGATTCATTGAAACAACAGCTTGAGAAATCTGAAGATTTTGAGGATAAGTTGATTGAAAGAGAGGCTTTCATAGAACAGCTCAATGTTGAGCTTGAA GCTGCCAAGATGGCCGAATCTTATGCATGTAACTTAGTAGAGGAGTGGAAAAACAGGGTTGAGGAACTAGAGATGCAAGCTGAGGAAGCAAATAAGTTGG AGAGATCTGCATCGGAGTCATTAGGTTCAGTCATGAAACAACTTGAAGCAAACAATGATTTATTGCATGATGCGGAAACTGAAATTGCTGCTCTTAAAGA GAAGGTTGGGTTGCTGGAAATGACAATTAGAAGACAGAAAGGGGATCTTGAAGAATCAGAACATTCTCTTGGCATGGTAAAGGAAGAAGCATCGGTCATG GTAAAAAAGGTCGAGTCTCTGATGTCTGAGTTGGAAACTGTGAAGGAGGAGAAAGCCCAGGCTTTGAACAATGAGAAGCTTGCAGCTTCTAGTGTTCAAA GTCTGTTAGAAGAGAAAAACAAACTTATAACTGAGTTGGAGAATTCCAGAGATGAGGAGGAAAAGAGCAAGAAGGCAATGGAGAGTTTAGCTTCAGCCTT ACATGAAGTTTCTGCGGAAGCAAGGGAAGCCAAAGAAAGGCTGGTATCCAATCAAGTGGAGCATGAAAACTATGAAACCCAAATAGAAGACTTGAGATTG GTCCTAAAGGCAACTAATGAAAAATATGAAACTGTGCTTGATGATGCAAAACATGAGATTGATCTTCTTAGAAACACTGTTGAAGAATCCAAGAATCAAT TTCAGAACTCCAAGGCTGAATGGGATCAAAAAGAAAAAAATCTGGGGAATTATTTAAGGAAATCAGAAGAAGAAAATTCCTCGCTGGAAAAAGAAATAGA TAGGTTAGTGAATTTGCTGACACACACTGAGGAAGAAGCTTGTGGAATGAGGGATGAAGAAGCTCATTTGAAGGATAGCCTGAAGGAAGTAGAAGCTGAG GTGATTTCTTTGCAGGAAGCTCTTGGGGAAGCAAGGGTTGAGAGCATGAAACTAAAAGAGAGTTTATTGGACAAAGAAAATGAGTTTCAGAACATTTTTC AGGAAAATGAAGAGCTCCGGACTAAGGAAGCTTCCTTGCATAAGAAGGTCGAGGAGTTATCTAAGTTGCTTGAGGAAGCTATGGCTAAAAAGCAAGTGGA GGAAAATGGTGAGCTCACAGATAGTGAAAAGGACTATGATTTGCTTCCAAAGGTGGTTGAGTTCTCTGAAGAAAATGGACATGTGAGAGAAGAGAAGCCC ACAATGGAGCTTCCACTACAGCTATCCAATGAGCTGAACACGGAAAATGCACAGGAACAGATTAATGGCGCGACAAACAAGGCTGCTCAGATGGATGCAC ACAAACTTGAGAATGTGAATGGAAATCCAAAGGAAGATGAGAGCAAAGAGAAGGAGGATGATTCTGTGGAGGTTGAATTTAAGATGTGGGAGAGCTGCAA GATTGAAAAGAAAGAGTTTTCACCAGAAAGAGAAACAGAGCACGAATCCTCCTTCGAGGACGAAGCGGACTCCAAGGTGGATGGTGGTGAGAGCTTTGAT CAAATAAATGGTTTATCTTCAACAGAGAATGTTGATGATGGTGGAAGCTCGCCTTCAAAGCAGCAGCAACAGAAGAAGAAGAAGCCTTTGCTCCGCAAGT TTAGTAACCTACTCAAGAAGAAGGGAACTAGCAACCAGAAGTAG
AA sequence Show only first row Show all	>Potri.013G079000.2 pacid=42811811 polypeptide=Potri.013G079000.2.p locus=Potri.013G079000 ID=Potri.013G079000.2.v4.1 annot-version=v4.1 MSSKTRSGLSETPSKPSPATPRVSKLSRGVAKSESDSPSPLQSSRLSVDRSPRSINSKPTIDRRAPKVTTATPPEKPKTRVVKGSELQAQLNAVQEDLKK AREQIEFIEKERAQAIDELKQAQKAAEDANEKLQEALVAQKRAEENSEIEKFRAVELEQAGIEDAQKKEEEWQKELEAVRSQHALDVTALLSTTQELQRL KQELAMITDAKNQALSHADDATKIAEIHAEKVEMLSSELTRLNVLLDSKLETEAIESNKIVLQLNEEIDSLKQQLEKSEDFEDKLIEREAFIEQLNVELE AAKMAESYACNLVEEWKNRVEELEMQAEEANKLERSASESLGSVMKQLEANNDLLHDAETEIAALKEKVGLLEMTIRRQKGDLEESEHSLGMVKEEASVM VKKVESLMSELETVKEEKAQALNNEKLAASSVQSLLEEKNKLITELENSRDEEEKSKKAMESLASALHEVSAEAREAKERLVSNQVEHENYETQIEDLRL VLKATNEKYETVLDDAKHEIDLLRNTVEESKNQFQNSKAEWDQKEKNLGNYLRKSEEENSSLEKEIDRLVNLLTHTEEEACGMRDEEAHLKDSLKEVEAE VISLQEALGEARVESMKLKESLLDKENEFQNIFQENEELRTKEASLHKKVEELSKLLEEAMAKKQVEENGELTDSEKDYDLLPKVVEFSEENGHVREEKP TMELPLQLSNELNTENAQEQINGATNKAAQMDAHKLENVNGNPKEDESKEKEDDSVEVEFKMWESCKIEKKEFSPERETEHESSFEDEADSKVDGGESFD QINGLSSTENVDDGGSSPSKQQQQKKKKPLLRKFSNLLKKKGTSNQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16730			Plant protein of unknown funct...		Potri.013G079000 [exp]	0	1
AT3G18480		AtCASP	CCAAT-displacement protein alt...		Potri.012G061000 [exp]	1.41	0.9376
AT3G01780		TPLATE	ARM repeat superfamily protein...		Potri.001G334300 [exp]	2.00	0.9322
AT2G23360			Plant protein of unknown funct...		Potri.005G140300 [exp]	2.44	0.9212
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.011G068800 [exp]	5.47	0.9156
AT5G03110			unknown protein		Potri.016G086900 [exp]	6.48	0.9121
AT4G27120			unknown protein		Potri.001G418900 [exp]	6.92	0.8888
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	7.41	0.9222
AT1G12310			Calcium-binding EF-hand family...		Potri.003G115000 [exp]	8.00	0.9276
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.019G084100 [exp]	9.38	0.9154
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G129400 [exp]	10.39	0.9286	Pt-FLA14.7

Compare expression of checked genes

Potri.013G079000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.