Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23910 262 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G30470 245 / 4e-80 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G14700 144 / 3e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 141 / 1e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G35420 139 / 9e-39 TKPR1, DRL1 tetraketide alpha-pyrone reductase 1, dihydroflavonol 4-reductase-like1 (.1) AT5G58490 138 / 2e-38 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 134 / 4e-37 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 132 / 3e-36 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 130 / 1e-35 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 126 / 1e-33 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093700 [exp] 434 / 2e-154 AT2G23910 264 / 1e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G140700 [exp] 426 / 2e-151 AT2G23910 265 / 4e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G178700 [exp] 283 / 6e-95 AT4G30470 416 / 1e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.018G100500 [exp] 275 / 9e-92 AT2G23910 438 / 4e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G349600 [exp] 183 / 4e-55 AT5G14700 372 / 3e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G110500 [exp] 164 / 6e-48 AT5G14700 228 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G105000 [exp] 158 / 7e-46 AT5G14700 213 / 2e-66 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G045000 [exp] 142 / 5e-40 AT1G15950 484 / 3e-173 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Potri.003G181400 [exp] 142 / 6e-40 AT1G15950 503 / 1e-180 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020372 [exp] 327 / 2e-112 AT2G23910 226 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009549 [exp] 279 / 9e-94 AT2G23910 172 / 4e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10006885 [exp] 250 / 5e-82 AT2G23910 417 / 8e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003780 [exp] 243 / 4e-79 AT2G23910 414 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022239 [exp] 172 / 5e-51 AT5G14700 374 / 4e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 153 / 7e-44 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10024068 [exp] 152 / 3e-42 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10039595 [exp] 143 / 3e-40 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035369 [exp] 133 / 2e-36 AT1G15950 456 / 6e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10030973 [exp] 132 / 6e-36 AT1G15950 457 / 1e-162 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01073 [poplar] [flax] 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family
Representative CDS sequence Show only first row Show all	>Potri.013G079500.1 pacid=42811982 polypeptide=Potri.013G079500.1.p locus=Potri.013G079500 ID=Potri.013G079500.1.v4.1 annot-version=v4.1 ATGGCAACAGCCGCTTCTTTCAATCAAACTTCAAAGACAGTTTGTGTAATGGATGCTTCTGGGCCTTTAGGTTCTTCCATTGTGCACAGGCTCTTACAGA GAGGTTACAGTGTCCATGCTGCTGTCCAAAACCAAGGTAAATTATGGCAATCATTTGAAGGATTATCCTGCAACAACGAGAAATTGAAAGTTTTCCATTC CGACCCTTTTGATTACCACAGCATAATGGATGCCTTGAAGGGATGCTGTGGCTTGTTTTATTCCTTTGAGCCCCCCTCAGATCAACCCACCTATGATGAA TTCATGGCTGATGTAGAGGTGAGGGCAGCACACAATGTATTGGAAGCATGTGCACAAACAAACACTATAGACAAAGTTGTCTTCACTTCCTCTGCAACAA CTGTTATATGGAATGACAGTCACAGAAAGGCACCTGATCTTGATGAGAGAAATTGGAGTGACCTAAATTTCTGCAGAAAGTTTAAGCTATGGCAAGCACT ATCAAAAACGCTAGCTGAGAAGACAGCATGGGCTCTAGCAATGGACCGAAGCATCAACATGGTGACCGTAAATGGAGGGCTCTTGATGAGTCCTGATCTA ACAATCGCAAATCCTTATTTAAAAGGAGCAGCTGAAATGTATGAAGATGGTGTATTTGTTACTGTGGACCTCAGGTTCATCGTGGACACACACATCCATG TATTTGAAGACATTACATCTTATGGAAGATATCTCTGCTTCAACCATGTCATCAAATGCAACGAAGATGCTGTTAAGCTCGCTAACACGCTGTTGCCACC CTCCGAATCTTCACTTCCTCAGAGTTTGGAAGATACAAGAATCCACCAACAAAGGATAAGCAATAAGAAACTAAACAAGCTAATGGTGGACTTTGACAGT AAACTTCGAGTTGATTGA
AA sequence Show only first row Show all	>Potri.013G079500.1 pacid=42811982 polypeptide=Potri.013G079500.1.p locus=Potri.013G079500 ID=Potri.013G079500.1.v4.1 annot-version=v4.1 MATAASFNQTSKTVCVMDASGPLGSSIVHRLLQRGYSVHAAVQNQGKLWQSFEGLSCNNEKLKVFHSDPFDYHSIMDALKGCCGLFYSFEPPSDQPTYDE FMADVEVRAAHNVLEACAQTNTIDKVVFTSSATTVIWNDSHRKAPDLDERNWSDLNFCRKFKLWQALSKTLAEKTAWALAMDRSINMVTVNGGLLMSPDL TIANPYLKGAAEMYEDGVFVTVDLRFIVDTHIHVFEDITSYGRYLCFNHVIKCNEDAVKLANTLLPPSESSLPQSLEDTRIHQQRISNKKLNKLMVDFDS KLRVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23910			NAD(P)-binding Rossmann-fold s...		Potri.013G079500 [exp]	0	1
AT5G11420			Protein of unknown function, D...		Potri.018G031100 [exp]	1.00	0.9685
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G109700 [exp]	12.12	0.9585
AT2G18969			unknown protein		Potri.018G090200 [exp]	13.34	0.9585
AT5G39240			unknown protein		Potri.004G119600 [exp]	15.74	0.9572
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Potri.014G160200 [exp]	20.12	0.9534
AT5G54010			UDP-Glycosyltransferase superf...		Potri.006G179700 [exp]	20.49	0.9516
AT3G22800			Leucine-rich repeat (LRR) fami...		Potri.010G083100 [exp]	23.62	0.9526
					Potri.012G053400 [exp]	24.00	0.9515
AT1G14430			glyoxal oxidase-related protei...		Potri.001G083600 [exp]	24.69	0.9511
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	25.92	0.8930

Compare expression of checked genes

Potri.013G079500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.