Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16750 1186 / 0 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G25150 94 / 1e-19 TAF5 TBP-associated factor 5 (.1) AT3G49660 90 / 2e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 90 / 3e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT2G21390 90 / 4e-18 Coatomer, alpha subunit (.1) AT5G23430 89 / 5e-18 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G48630 86 / 1e-17 RACK1B_AT receptor for activated C kinase 1B (.1) AT1G62020 88 / 2e-17 Coatomer, alpha subunit (.1) AT1G11160 87 / 2e-17 Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 85 / 2e-17 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G047300 [exp] 983 / 0 AT5G16750 794 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G263400 [exp] 95 / 1e-19 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 95 / 1e-19 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 88 / 1e-18 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 89 / 5e-18 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 88 / 1e-17 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G069700 [exp] 88 / 2e-17 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.011G045500 [exp] 87 / 2e-17 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G074800 [exp] 87 / 3e-17 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001301 [exp] 1177 / 0 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10012706 [exp] 1171 / 0 AT5G16750 1144 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10024447 [exp] 98 / 1e-20 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 98 / 2e-20 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10014674 [exp] 93 / 3e-20 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 92 / 9e-20 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 92 / 1e-19 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 92 / 8e-19 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10018458 [exp] 92 / 1e-18 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033802 [exp] 91 / 2e-18 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF08625 [poplar] [flax] Utp13 Utp13 specific WD40 associated domain
Representative CDS sequence Show only first row Show all	>Potri.013G079600.2 pacid=42811451 polypeptide=Potri.013G079600.2.p locus=Potri.013G079600 ID=Potri.013G079600.2.v4.1 annot-version=v4.1 ATGTCGTCATTACAAATAAAGAAAAACTACAGGTGCGTCCCGTCTCTGCAGCAATTCTACAGCGGAGGCCCTTTTGCTGTCTCTTCTGACGGTTCCTTCA TTGCTTGCGCGAACGGGGACGCTATCAAGATTTTGGATTCTTCCAACGCATCAATAAAAGCCAGCATAGAGGTTGATACAGATTCTGGTCTAACCGCCTT AGCTCTTGACCCCAATGATAGATTTCTTTTTTCTGCCGGGCACAGCAGGCTTATAAGGGTCTGGGACTTGTCCACTTTCAAATGCATCCGCTCTTGGAAG GGCCATGATGGTCCTGTGATGTCCATGGCTTGCCATGCTTCTGGAGGGTTGCTTGCAACTGCAGGAGCTGATAGGAAAGTACTTGTTTGGGATGTTGATG GTGGCTTCTGTACTCATTACTTTAAAGGGCATAAAGACGTTGTGACTAGCATTATGTTCCATCCTGATACCAATAAAACTCTGCTTTTCTCAGGAAGTGC TGATGCTACTGTACGAGTTTGGGATCTTCTAGCAAAGAAGTGTATCGCAACATTAGAAAGGCATTTCTCAGCACTTACGTCTATGGCAGTGTCTGAAGAT GGATGGACATTGCTTACTGCTGGAAGAGATAAGGTTGTAAACTTGTGGGACCTTCATGACTATGTATGCAAGATGACTATTCCAACTTATGAAGTGCTGG AAGGTTTGTGTGTAGTTAAATCAGGGACTGAGTTAGCTTCATTTCTGGGTTCATGCAATCAGCAAAGTGGGAAGAGGAGAGACAGGTCATCACCAATTTA TTTTGTCACAGTTGGTGAACGTGGGATTGTACGAATATGGGATTCTGAATGTGGGGTTAGCTTGTATGAACAGAAGTCCTCAGATGTTGCTGTCTCCTCT GACACAGATGATTCTCTGAGAGGCTTCACTGCTGCTGTTATCCTTCCATTAGATCAAGGTTTACTTTGTGTGACCGTTGATCATCACTTTCTGTTCTACT CTCTACTTGGACACCCTGAAGAGAAATTCAAGTTAATTCTGAACAAGAGGCTTGTTGGGTATAATGAAGAGATTCTTGACATGAGGTTTCTGGGAGAGGA GGAAAAGTTTCTTGCTGTTGCTACAAATCTTGAACAGGTTCAAGTGTATGACATGGAATCTATGTCATGCTCCTATGTATTGGCAGGTCATACTGAAATT GTTTTATGCCTTGACACCTGTGTATCAAGCTCTGGAAGGCCACTTCTTGCAACAGGAAGTAAGGACAACAGTGTAAGGTTGTGGAATTCAGAGAGCAGAA ATTGCATTGGTGTTGGCACAGGTCACATGGGAGGTGTTGGAGCTGTTGCATTTTCAAAGAAGTGGAAGAATTTCTTTGTTAGTGGTAGCAGTGATCGTAC CATCAAGGTGTGGAGTTTAGATGGTATCTCAGATGATGCAGACCAGCCTATAAATTTGAAAGCAAAAGCTGTGGTGGCAGCACATGACAAGGATATAAAT TCGCTGGCTATTGCACCAAATGATAGTTTGGTTTGTAGCGGTTCACAAGACCGGACTGCTTGTGTGTGGAGGCTGCCAGATCTGGTATCTGTAGTTGTAC TTAAAGGGCATAAAAGAGGAATATGGTCAGTAGAGTTTTCTCCAGTTGATCAATGTGTTATAACAGCATCTGGTGATAAAACAATAAAGATGTGGGCTAT AGCTGATGGGTCATGCTTGAAAACATTTGAAGGGCACACATCAAGTGTTTTAAGAGCATCATTTCTTACTCGTGGAAGTCAATTTGTTTCGTGCGGTGCT GATGGTTTGGTAAAGCTATGGACAGTCAAAACAAATGAATGCACTGCTACATATGATCAACATGAGGACAAGGTTTGGGCCTTGGCAATCGGAAAAAAGA CAGAAATGTTTGCAACTGGCGGTGGTGATGCTGTTGTTAATCTGTGGTATGATTCAACTGCTTCAGATAAAGAGGAAGCTTTCCGAAAAGAAGAGGAAGG GGTATTGAGAGGTCAAGAATTGGAAAATGCTGTGTTAGATGCTGACTACATTAAAGCTATCCAAATAGCATTTGAACTTCACAGGCCTAATAAACTTTTT GAGTTGTTTGCTGAACTTTGCAGGAAGAAGGAAGGTAGCAGTCAGATAGAGAAAGCCCTCCATGTTCTTGGCAAGGAAGAAATTCATCAACTTTTTCAAT ATGTTCGTGAATGGAATACAAAGCCAAAGTTGTGTCATGTTGCACAATATGTGTTGTTTGGAGTTTTCAACATCCTTCCTCCAACAGAGATTCTTGAGAT AAAAGGCATCGGGGAACTTCTTGAAGGTCTTATCCCATATTCCCAAAGGCATTTAAGCAGGATAGACAGACTTTTGAGGAGCACATTTTTGCTCGACTAC ACCCTACATGGAATGTCAGTTATTGAACCAGATACTAATGCAACAGAAATGAAAGATGCTGATCAGGAGCAAGAGCTGACTTCAGAATTGTTGAAAGAGA AGGCTCCCTCAAAGAAACGGAAATCAAACAAATCTAAAGATAGTTCAAGTAAGAAAGTCAAGGGTGCTGCTTACACAAGCGTTGCTCCAATGTCCTTGAA GGCATAG
AA sequence Show only first row Show all	>Potri.013G079600.2 pacid=42811451 polypeptide=Potri.013G079600.2.p locus=Potri.013G079600 ID=Potri.013G079600.2.v4.1 annot-version=v4.1 MSSLQIKKNYRCVPSLQQFYSGGPFAVSSDGSFIACANGDAIKILDSSNASIKASIEVDTDSGLTALALDPNDRFLFSAGHSRLIRVWDLSTFKCIRSWK GHDGPVMSMACHASGGLLATAGADRKVLVWDVDGGFCTHYFKGHKDVVTSIMFHPDTNKTLLFSGSADATVRVWDLLAKKCIATLERHFSALTSMAVSED GWTLLTAGRDKVVNLWDLHDYVCKMTIPTYEVLEGLCVVKSGTELASFLGSCNQQSGKRRDRSSPIYFVTVGERGIVRIWDSECGVSLYEQKSSDVAVSS DTDDSLRGFTAAVILPLDQGLLCVTVDHHFLFYSLLGHPEEKFKLILNKRLVGYNEEILDMRFLGEEEKFLAVATNLEQVQVYDMESMSCSYVLAGHTEI VLCLDTCVSSSGRPLLATGSKDNSVRLWNSESRNCIGVGTGHMGGVGAVAFSKKWKNFFVSGSSDRTIKVWSLDGISDDADQPINLKAKAVVAAHDKDIN SLAIAPNDSLVCSGSQDRTACVWRLPDLVSVVVLKGHKRGIWSVEFSPVDQCVITASGDKTIKMWAIADGSCLKTFEGHTSSVLRASFLTRGSQFVSCGA DGLVKLWTVKTNECTATYDQHEDKVWALAIGKKTEMFATGGGDAVVNLWYDSTASDKEEAFRKEEEGVLRGQELENAVLDADYIKAIQIAFELHRPNKLF ELFAELCRKKEGSSQIEKALHVLGKEEIHQLFQYVREWNTKPKLCHVAQYVLFGVFNILPPTEILEIKGIGELLEGLIPYSQRHLSRIDRLLRSTFLLDY TLHGMSVIEPDTNATEMKDADQEQELTSELLKEKAPSKKRKSNKSKDSSSKKVKGAAYTSVAPMSLKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.013G079600 [exp]	0	1
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Potri.013G125800 [exp]	1.00	0.9349
AT4G28200			unknown protein		Potri.007G040000 [exp]	1.41	0.9282
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Potri.008G043400 [exp]	2.44	0.9232
AT1G31660			unknown protein		Potri.011G112500 [exp]	2.82	0.9131
AT1G09620			ATP binding;leucine-tRNA ligas...		Potri.004G226700 [exp]	5.29	0.8707
AT2G18220			Noc2p family (.1)		Potri.001G012800 [exp]	5.47	0.9072
AT1G04945			HIT-type Zinc finger family pr...		Potri.001G228000 [exp]	6.48	0.8972
AT1G29940		NRPA2	nuclear RNA polymerase A2 (.1)		Potri.001G030750 [exp]	7.48	0.8946
AT5G16930			AAA-type ATPase family protein...		Potri.011G143300 [exp]	8.06	0.8727
AT3G12270		ATPRMT3	ARABIDOPSIS THALIANA PROTEIN A...		Potri.001G030200 [exp]	8.48	0.8750

Compare expression of checked genes

Potri.013G079600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.