Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16820 344 / 9e-114 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 339 / 6e-112 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT1G32330 308 / 1e-99 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 273 / 6e-86 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT2G26150 196 / 3e-58 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G22830 196 / 1e-57 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT1G67970 172 / 6e-49 HSF AT-HSFA8 heat shock transcription factor A8 (.1) AT3G51910 160 / 1e-45 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT5G03720 157 / 4e-43 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT4G13980 156 / 4e-42 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138900 [exp] 390 / 4e-131 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 374 / 5e-125 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.005G214800 [exp] 212 / 4e-64 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 207 / 2e-62 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 204 / 4e-61 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 202 / 2e-60 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G226800 [exp] 195 / 3e-57 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.011G071700 [exp] 179 / 3e-51 AT4G18880 400 / 4e-138 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.010G104300 [exp] 179 / 3e-51 AT1G67970 319 / 7e-107 heat shock transcription factor A8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040911 [exp] 408 / 6e-139 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10030956 [exp] 327 / 8e-107 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 326 / 2e-106 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10011065 [exp] 311 / 6e-101 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 310 / 1e-100 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10006618 [exp] 209 / 2e-62 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 203 / 2e-60 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 186 / 9e-54 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10013797 [exp] 182 / 9e-53 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2) Lus10000492 [exp] 182 / 2e-52 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.013G079800.3 pacid=42812246 polypeptide=Potri.013G079800.3.p locus=Potri.013G079800 ID=Potri.013G079800.3.v4.1 annot-version=v4.1 ATGATTAGAATGGATAGTGGGAATAATAACACGAACACGGTGCCTCCATTTCTAAGCAAGACCTACGACATGGTAGACGACCCGTCGACGGATTCAGTGG TGTCATGGAGTAGCAGCAATAACAGTTTTGTGGTCTGGAATGTCCCAGAGTTTCAAACAGATCTTTTGCCTAAATACTTCAAGCACAGTAACTTCTCCAG CTTTGTCAGGCAATTGAATACTTACGGTTTCAGGAAGGTTGATCCTGATCGCTTTGAATTTGCAAATGAGGGGTTCTTAAGGGGCCAAAAACACCTTCTG AGGAGTATATCTAGGAAAAAACCTGTTCATGGTAACCTACCACCTCAAGTTCAGAGCTCTTCGGTTACCACATGCGTTGAGGTTGGGAAGTCTGGGCTCG AGGAAGAGGTTGAAAGACTTAAACGAGACAAAAATGTTCTCATGCAGGAACTTGTTAGACTGAGGCAGCAGCAGCAAGCCACAGATCACCAGTTGCACAC TGTGGGCCAACGTGTACAGGGAATGGAGCAGCGACAGCAACAAATGATGTCATTCCTTGCGAAGGCCATGCAGAATCCAGGCTTCTTAAGTCAGCTTGTA CAGCAGCAAAATGAAAGCAACAGACGCATTGCTGGTGCCAGTAAAAAGAGGAGACTTCCAAGGCAGGAGGAAGAGAATTTGGCTGGTGTGCAATGCAAAA CATCTCCTAATGGGCAGATTATCAAGTTCCATTCTTCAATGAATGAAGCAGCAAAAGCAATGTTGCACCAGATCCTGAAGATGAACTCATCACCTAGGCT GGAACCATCGATGAACAATTCTGGTCCCTTACTGATCGGTAATCATCCTTCTTCCAATGGATTAGACAGTGGGAGCTCTTCAACTCGGATGTCAGGAGTG ATGCTTTCAGAGGTTCCAACAGCTTCTGGGCCATCATATTTGCCTATGGAAACTGGGTTCCCAGCCAGCCATTCAACTACTGCCATTTCTGAGGTCCAAT CTCCTGCTTCTGTAGCAACCGACTATGTTAAAACAGATTATACTGCTGAGATGGGCATGCATAATTCTGGGCAAAATACCATCCTGCCCAACTTCACTGC AATGACAGGAATTGTGCCCGGAGGCTCTGCTGGAGGTCCTAACATGAATATTGCAGGGTCTGAGAAGGGGAATGCAGAGTTTTTTGACACCATGTCATCT GTGTTGGATGCGCCAGTGCCCATAGAAACTGAAGCTCTCTCTCCCAGCCAGGATGAGGAAGTCTTTCTGGATGGAAACCATAAGCTTCCTGGCATTAATG ATGTGTTCTGGGAACAATTTCTTACAGCAAGCCCGCTCAATGGGGAGACAGATGAAATTAATTCAAGCTCTCCAGAAAGTAGCATGAGCAAGGAGCAGGA ATTGCAATCATGGCAGGACAATGGATGGGACAATATTCAACATATGAATCGTCTAGCTGAACAAATGGGGCTTCTTACACCGGAAAGCTTAAAAGGGTGA
AA sequence Show only first row Show all	>Potri.013G079800.3 pacid=42812246 polypeptide=Potri.013G079800.3.p locus=Potri.013G079800 ID=Potri.013G079800.3.v4.1 annot-version=v4.1 MIRMDSGNNNTNTVPPFLSKTYDMVDDPSTDSVVSWSSSNNSFVVWNVPEFQTDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRFEFANEGFLRGQKHLL RSISRKKPVHGNLPPQVQSSSVTTCVEVGKSGLEEEVERLKRDKNVLMQELVRLRQQQQATDHQLHTVGQRVQGMEQRQQQMMSFLAKAMQNPGFLSQLV QQQNESNRRIAGASKKRRLPRQEEENLAGVQCKTSPNGQIIKFHSSMNEAAKAMLHQILKMNSSPRLEPSMNNSGPLLIGNHPSSNGLDSGSSSTRMSGV MLSEVPTASGPSYLPMETGFPASHSTTAISEVQSPASVATDYVKTDYTAEMGMHNSGQNTILPNFTAMTGIVPGGSAGGPNMNIAGSEKGNAEFFDTMSS VLDAPVPIETEALSPSQDEEVFLDGNHKLPGINDVFWEQFLTASPLNGETDEINSSSPESSMSKEQELQSWQDNGWDNIQHMNRLAEQMGLLTPESLKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Potri.013G079800 [exp]	0	1
AT3G07565			Protein of unknown function (D...		Potri.014G197300 [exp]	4.58	0.9107
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Potri.014G079400 [exp]	6.70	0.9012	Pt-DGD2.1
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	9.00	0.9088
AT5G51910	TCP	TCP19	TCP family transcription facto...		Potri.012G135900 [exp]	10.58	0.8938
AT4G28600		NPGR2	no pollen germination related ...		Potri.002G259300 [exp]	14.42	0.9019
AT3G18770			Autophagy-related protein 13 (...		Potri.001G309800 [exp]	14.69	0.8897
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.007G011100 [exp]	14.96	0.8909
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.009G045100 [exp]	24.08	0.8873
AT1G63850			BTB/POZ domain-containing prot...		Potri.004G154600 [exp]	24.39	0.8627
AT3G57990			unknown protein		Potri.016G046900 [exp]	25.41	0.8770

Compare expression of checked genes

Potri.013G079800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.