Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15750 1540 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT1G80490 1526 / 0 TPR1 TOPLESS-related 1 (.1.2) AT3G15880 1478 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT3G16830 1427 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 1354 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 237 / 1e-65 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 60 / 3e-09 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 53 / 6e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G67320 51 / 6e-06 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G25150 50 / 1e-05 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030000 [exp] 1561 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1506 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.018G128000 [exp] 1478 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G066800 [exp] 1474 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.005G021700 [exp] 1434 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 1416 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.006G257900 [exp] 1263 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 1259 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.006G258100 [exp] 1089 / 0 AT1G80490 1211 / 0.0 TOPLESS-related 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011481 [exp] 1558 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10043258 [exp] 1521 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10023119 [exp] 1499 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10020668 [exp] 1387 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10029876 [exp] 1385 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10038094 [exp] 1237 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10019401 [exp] 956 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10006650 [exp] 922 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10001951 [exp] 908 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 807 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.013G081300.8 pacid=42811892 polypeptide=Potri.013G081300.8.p locus=Potri.013G081300 ID=Potri.013G081300.8.v4.1 annot-version=v4.1 ATGTCTTCCTTAAGCAGGGAACTGGTGTTTCTGATCTTGCAGTTCTTGGACGAGGAGAAGTTCAAGGAAACTGTTCATAAGTTAGAGCAAGAGTCTGGTT TTTTCTTCAATATGAAACATTTTGAGGATCAAGTTCAGGCTGGTGAATGGGATGAGATTGAGCGATATTTATGTGGATTCACGAAGGTTGAAGATAACCG TTACTCTATGAAGATATTCTTCGAAATAAGAAAGCAGAAATATTTGGAGGCTCTTGATAGACAGGATCGGGCAAAGGCTGTTGAGATTCTTGTTAAGGAC CTGAAGGTTTTTGCATCCTTCAATGAAGAACTTTTCAAGGAAATAACTCAGTTGCTTACACTTGATAATTTCAGGCAAAATGAGCAGCTTTCGAAATACG GGGACACAAAATCAGCTCGAAATATCATGCTTGTCGAACTTAAAAAGCTGATTGAAGCAAACCCGCTGTTTCGAGACAAGCTTACTTTCCCACCCTTCAA AAGTTCGCGACTTAGAACGTTAATAAACCAGAGTCTTAATTGGCAGCATCAACTTTGTAAGAATCCTCGTTCAAACCCTGACATCAAAACTCTATTTATT GATCATTCTTGCACTCCTACAACTGCTAATGGGGCTCATCCACCTCCTCCCTCGAACACCCCCCTTGTGGGACCGATTCCTAAGGCTGGGGCATTCCCCC CTATTGGAGCCCATGGCCCTTTTCAACCTGTTGTTTCCCCAACTCCGGGTGCTATTGCTGGTTGGATGTCGGCCAATAATCCTTCTTTACCACACCCTGC TGTGGCAGCGGGCCCCCCTACTCTTGTGCAGCCTTCTAGTGCAGCTGCCTTCTTGAAACACCCAAGGACTCCCACAGGAATGACAGGAATGAATTATCAG TCAGCTGATTCAGAACACTTGATGAAGCGGATGCGCCCTGGCCAATCTGAAGAGGTTTCCTTTTCTGGTATAGCACATACTCCCAATATCTATTCCCAAG ATGACCTTCCCAAAACTGTTGTACGGACCCTTAACCAAGGATCCAATGTCATGAGCATGGACTTTCATCCACAGCATCAAACCATCCTGCTAGTTGGGAC AAATGTTGGTGACATTAGCCTTTGGGAAGTTGGCTCCCGGGAAAGGTTGGCACATAAACCTTTCAAAGTTTGGGATCTCTCTGCTTCTTCAATGCCACTG CAGACAGCATTGTTGAATGATGCTGCAATATCTGTAAATCGATGTGTGTGGGGGCCAGATGGACTAATGCTTGGTGTTGCATTTTCGAAACATATAGTGC AAATATATACTTACAATCCAACTGGAGAACCGAGGCAGCATTTAGAGATTGATGCCCATGTCGGTGGTGTGAATGATATTGCATTTGCTCATCCCAACAA ACAACTATGCATTGTCACATGCGGTGATGACAAGATGATTAAGGTTTGGGATGCTGGAGCAGGAGGCAGACAATATATATTTGAAGGCCATGAAGCGCCT GTGTATTCGTTGTGTCCCCATTACAAAGAAAATATCCAGTTTATTTTTTCAACAGCAATTGATGGGAAGATTAAAGCTTGGCTATATGATTCTTTGGGAT CTAGAGTGGACTATGATGCTCCTGGACTTTGGTGCACCATGATGGCATATAGTGCAGATGGGACTAGGCTCTTCTCTTGTGGAACAAGTAAAGAAGGTGA ATCTCACCTAGTTGAGTGGAATGAGAGTGAAGGATCTATCAAACGAACATATTTGGGTTTCAGGAAGCGTTCTTTAGATGTTGTTCAGTTTGACACAACA AGGAGCCACTTCTTAGCTGCTGGTGATGAGTTTCAAATTAAGTTTTGGGATATGGATAATACAAACATGTTGACAGCTGTTGATGCAGATGGGGGGTTGC CTGCTAGTCCTAGACTGAGATTTAACAAGGAAGGTTCATTGTTGGCAGTCACAACTAGTGACAATGGTATTAAAATTCTAGCCAGTAGTGATGGATTGCG CTTGATAAGGATGTTGGAGAGCAGGGCTATTGATAAAAGTCGAAGCCCGTCAGAACCAATCAACTCTAAGCCACTGATTGTTAACGCACTAGGCTCTGTG GCAAATGTTTCTTCTGGCCTCGCATCATCACTGGAACGCTCAGATAGAATCCAGCCTGCAGTTTCTATTGGCAATCTTGGTACCATGGACAACAGTAGGC TTGTTGATGTTAAACCAAGGATTTCAGATGATACAGACAAATTGAAAAGCTGGAAGAGTGATATTGTAGATTCATCTCAGCTAAAAGCTTTGCGGTTGCC TGACTCCATAGTAGCTGGCAAGGTTGTGCGGCTGATTTATACTAACTCAGGGCTGGCTCTATTGGCCCTTGCCTCTAATGCTGTCCACAAGCTGTGGAAA TGGCAGCGCAGTGAAAGAAATCTGACAGGAAAGGCTACTGCATCAAATGCACCACAGTTGTGGCAGCCTCCTAGTGGAACTCCCATGACTAATGATATAA ATGAGAGCAAACCAGCTGAAGAATCTGCTGCATGCATTGCACTATCCAAAAATGATTCTTATGTCATGTCTGCCTCTGGTGGGAAGGTCTCTTTGTTCAA CATGATGACATTCAAGGTCATGACAACATTTATGTCCCCACCTCCTGCAGCCACTTTTTTAGCATTCCATCCTCAAGATAATAACATTATTGCAATTGGC ATGGAGGATTCTACTGTGCAAATATATAATGTCAGAGTTGATGAGGTCAAAACTAAACTCAAGGGCCACCAGAATCGAATAACAGGACTTGCTTTTTCAC AGAGTTTAAATGTGCTGGTGTCTTCTGGGGCTGATGCACAGTTGTGTGTCTGGAGCATTGATGGATGGGAGAAAAAGAAAATGAGGTTCATTCAAGCACC ACCTAGTCGTCAATCCCCTTTGGTAGGCGAAACTAGAGTCCAATTTCATAATGACCAAGCACATCTGTTGGTTGTCCATGAAAGCCAAATTGCCATCTAT GACAGCAAACTTGAATGTTCGCGCTCATGGTCTCCTAAAGACACCCTTGCGGCTCCCATTTCAAGTGCAATATATTCAAGTGATGGTTTCTTGGTTTATA CGGGTTTTTGTGATGGTGCTGTTGGAGTTTTTGATGCGGACAGCTTAAGAATCAGATGCCGAATAGCACCTTCTGCTTATATACCTTCACACCCTGCAGG CAGCACTGCCTATCCTTTGGTTATAGCTGCTCATCCATCTGAGCCCAATCAGATTGCACTTGGTATGAGTGATGGTGCAGTACATGTGGTTGAGCCATCT GATGTGGAGATGAAGTGGGGTGGCCCATCCTCTCAAGATAACGGGACCCATCCGTCTAATACATCGAATCCTTCTCCAAGTGGTCACCTGTCAGAGCTCC CTTCCAGGTGA
AA sequence Show only first row Show all	>Potri.013G081300.8 pacid=42811892 polypeptide=Potri.013G081300.8.p locus=Potri.013G081300 ID=Potri.013G081300.8.v4.1 annot-version=v4.1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKHFEDQVQAGEWDEIERYLCGFTKVEDNRYSMKIFFEIRKQKYLEALDRQDRAKAVEILVKD LKVFASFNEELFKEITQLLTLDNFRQNEQLSKYGDTKSARNIMLVELKKLIEANPLFRDKLTFPPFKSSRLRTLINQSLNWQHQLCKNPRSNPDIKTLFI DHSCTPTTANGAHPPPPSNTPLVGPIPKAGAFPPIGAHGPFQPVVSPTPGAIAGWMSANNPSLPHPAVAAGPPTLVQPSSAAAFLKHPRTPTGMTGMNYQ SADSEHLMKRMRPGQSEEVSFSGIAHTPNIYSQDDLPKTVVRTLNQGSNVMSMDFHPQHQTILLVGTNVGDISLWEVGSRERLAHKPFKVWDLSASSMPL QTALLNDAAISVNRCVWGPDGLMLGVAFSKHIVQIYTYNPTGEPRQHLEIDAHVGGVNDIAFAHPNKQLCIVTCGDDKMIKVWDAGAGGRQYIFEGHEAP VYSLCPHYKENIQFIFSTAIDGKIKAWLYDSLGSRVDYDAPGLWCTMMAYSADGTRLFSCGTSKEGESHLVEWNESEGSIKRTYLGFRKRSLDVVQFDTT RSHFLAAGDEFQIKFWDMDNTNMLTAVDADGGLPASPRLRFNKEGSLLAVTTSDNGIKILASSDGLRLIRMLESRAIDKSRSPSEPINSKPLIVNALGSV ANVSSGLASSLERSDRIQPAVSIGNLGTMDNSRLVDVKPRISDDTDKLKSWKSDIVDSSQLKALRLPDSIVAGKVVRLIYTNSGLALLALASNAVHKLWK WQRSERNLTGKATASNAPQLWQPPSGTPMTNDINESKPAEESAACIALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMSPPPAATFLAFHPQDNNIIAIG MEDSTVQIYNVRVDEVKTKLKGHQNRITGLAFSQSLNVLVSSGADAQLCVWSIDGWEKKKMRFIQAPPSRQSPLVGETRVQFHNDQAHLLVVHESQIAIY DSKLECSRSWSPKDTLAAPISSAIYSSDGFLVYTGFCDGAVGVFDADSLRIRCRIAPSAYIPSHPAGSTAYPLVIAAHPSEPNQIALGMSDGAVHVVEPS DVEMKWGGPSSQDNGTHPSNTSNPSPSGHLSELPSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Potri.013G081300 [exp]	0	1
AT2G26780			ARM repeat superfamily protein...		Potri.001G274500 [exp]	5.83	0.7561
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.008G048900 [exp]	6.92	0.7351
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.006G198300 [exp]	8.12	0.7288	Pt-UBP12.2
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Potri.001G231800 [exp]	10.00	0.6695	Pt-CPSF100.2
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.010G023500 [exp]	14.69	0.7114
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.018G060300 [exp]	19.49	0.6746
AT5G53620			unknown protein		Potri.015G006700 [exp]	25.19	0.7143
AT2G37690			phosphoribosylaminoimidazole c...		Potri.013G043500 [exp]	25.69	0.7231	PURE.1
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Potri.011G143000 [exp]	29.93	0.7032
AT3G02280			Flavodoxin family protein (.1)		Potri.004G101100 [exp]	33.46	0.7019

Compare expression of checked genes

Potri.013G081300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.