Plant FIBer expression Database

Potri.013G081400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G03140 202 / 6e-55 Tudor/PWWP/MBT superfamily protein (.1)
AT3G21295 153 / 8e-39 Tudor/PWWP/MBT superfamily protein (.1)
AT1G51745 130 / 2e-31 Tudor/PWWP/MBT superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G048100
[exp]
1132 / 0 AT3G03140 364 / 3e-114 Tudor/PWWP/MBT superfamily protein (.1)
Potri.003G045600
[exp]
165 / 3e-42 AT1G51745 362 / 4e-116 Tudor/PWWP/MBT superfamily protein (.1.2)
Potri.001G193900
[exp]
164 / 5e-42 AT1G51745 360 / 3e-115 Tudor/PWWP/MBT superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013363
[exp]
260 / 3e-76 AT3G03140 322 / 1e-99 Tudor/PWWP/MBT superfamily protein (.1)
Lus10004108
[exp]
243 / 9e-70 AT3G03140 311 / 3e-95 Tudor/PWWP/MBT superfamily protein (.1)
Lus10037614
[exp]
161 / 3e-41 AT3G21295 370 / 3e-119 Tudor/PWWP/MBT superfamily protein (.1)
Lus10006874
[exp]
152 / 3e-38 AT1G51745 338 / 1e-106 Tudor/PWWP/MBT superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0049 Tudor PF00855 PWWP PWWP domain
Representative CDS sequence
>Potri.013G081400.1 pacid=42811943 polypeptide=Potri.013G081400.1.p locus=Potri.013G081400 ID=Potri.013G081400.1.v4.1 annot-version=v4.1
ATGGAGGAGAGTCCTGGGACGGCGGCCGATGGTGGCATAGGTCCGATTGTGTGGGTGCGGAGAAGAAACGGGTCGTGGTGGCCTGGTCACATAATGGAGG
CGGATGAGCTCGCAGAGTATAATCTAACATCGCCGCGAACAGGGACTCCGGTCAAACTCCTTGGAAGGGATGATGCTAGCGTGGACTGGTACAATTTAGA
AAAGTCAAAGCGTGTGAAAGCATTTCGGTGTGCTGAATTTTCTGATTGCATCAAAAGGGCTGAATCTGCCTTGGGCATGCCAATCAAGAAAAGAGAGAAA
TATGCACGTCGAGAAGATGCAATTCTTCATGCCCTTGAGCTTGAAAAGCGACTCTTGATAAAGCAAGGAAAATTGGGTGTTGCCCAGGGCAGCCCAAGAA
GTAAATCATCTGGGTCTGTGAAGTCCGAGCTGGGTGCATTTTCAGAAGGCTTAGGAAGTAATATTGGAAAACCTGAGGATGTTAAATGGAACCTACCTTC
TAGAGAAGTTGATACAGAGATTCCAGGCAGTCCACTTCCATTGAAAGCTAAGGATGGAGATCAAACAGTTTTAGAAGATCACAGTGAGGAAATGCTGCGG
ACGAGAGGTTCGCAGGACTTCAGGCTGAGGACTTCTTTAAAGCGAAAACTTTCGCCTTCTGTTGATTTAGATGGTTCTTGGAGGAGACCTATAGCAGACC
ACAAATATGAGGATCCTCCTAACAGTGCCCCTCTTGTGGAAATAACTGCTCATGCAAACGGATTGGAGAAGATGGGAGATATTTTCCAGGCAAAGAGGAG
GGGATGTTCTAACTTGCCTGCTGATTCTAGTGATTCTACAGATGATAAAGAACTTCCTCCAAGCCAGAATAAGATGTCTTCTTCTTGCTTTGAAGACAGG
GTGCGTTCCCATGCTGGTTCATCAAATGAAGAGGAGTCGTCCTCTGGATCTATGGAAGATATTGAATCTGATTTTTCTGGATCTAATTCATCTGAATCCG
TGTCTGATTCTTCTCAGACTGAACCAGATATGGACAAAGAAATGGTTGTTTTTTCAGATGTTGCTGTGCCTATAGAAGCTGAACAGGATGTTCTGGGACA
GCCTGATGCACCAGCACAACATGCTAGTACATGCAGTGACGAGTCTGATGGATCAATGTCTTCTGATGACATGGATAACCTTTATCATGATGACCTCTTT
CTTGCGAACGAAGCAGTGTCCAAATGGCAATTGAAGGGGAAAAGGAACATTCGATATCTTACACAGAAGCCTGTCAACATGGAATATGGAAAAGGTTCTA
ATGGAGCTTCTCATGGAACCTTTTACAGGATGAAAGGAAGTATCTCTAGCCAAAGGGCATATGGTTCTCATGATGCCAATTTGGGCAGAAAATATATTGG
GTCCAAACCGAATTGTCCTGGCAACAGAGGTTATTCTTATTCATCAAGGTTGGCGTCCAGAGATCAAAATAATACTGGTCGTAATATGATAGAATGGGAA
GGCATGGGTTTGGAGGATCAACATACTTTTAGGAGACACTGGGAAGACAGAGGGGAGCACTCTAATCCAATATTTGCTGGCCATCACCATTTTGGGGGAA
GGGCAAGATCTATGTTAATAGATGTGGATTTAAAGGTCAAATCAAGCTACCAAAAAGATCGTGTTCCTATTGTTTCCCTTATCAGCAAGTTTGATGGGAA
GGCAATAATAGGACATCCGATCTTAATTGAAGCTGTGGAAGATGGTTCATCTGAAACTTATTTCCCTCTGAATGATTATTATAGCAATGAAGCAGTTGAC
CATGATGAAAGCACTTCACTTCCACCAGCATGGCGGACTGCAAGAAGGACCAATTCTAGGGTACCTCGCCCCCATTTATCATCAGTGTTGGGAGTTGATG
CTGGTGCTGAGGATATTCCATTTATGGATCAAGAAAGAACAGTTCCGTTTAGGAAATCAAGTGCAGGCAGTTTCAGTTACAAGGCAAACCTGGTGAGGAA
GAGTCTTCCCCACATTTCCCGGTCTTCAGCAGACAAGAAGCTCCCGAGAAAACTGCCAAAGAAAGTAAGCTTACCATCTAATCAAAAAACGAGAACCCTG
TCATCAATTGGTATCAAGCAGAATTCTGTTTCTAAGCCAATGCACGATACGAGCAATGGTCAAATGGATGGGCTTATCAAACCTGAGACATCTGCGCCAA
CTACGGTTGCTTGCATACCTGTCAAATTAGTTTTCAGTAGGTTACTTGAGAAGATCAATAGACCTCCATCAAAAACAGCTATCAAAGTGGTGGTCTTGAA
CATGGATAGGGATAGGCAACCTTCATAG
AA sequence
>Potri.013G081400.1 pacid=42811943 polypeptide=Potri.013G081400.1.p locus=Potri.013G081400 ID=Potri.013G081400.1.v4.1 annot-version=v4.1
MEESPGTAADGGIGPIVWVRRRNGSWWPGHIMEADELAEYNLTSPRTGTPVKLLGRDDASVDWYNLEKSKRVKAFRCAEFSDCIKRAESALGMPIKKREK
YARREDAILHALELEKRLLIKQGKLGVAQGSPRSKSSGSVKSELGAFSEGLGSNIGKPEDVKWNLPSREVDTEIPGSPLPLKAKDGDQTVLEDHSEEMLR
TRGSQDFRLRTSLKRKLSPSVDLDGSWRRPIADHKYEDPPNSAPLVEITAHANGLEKMGDIFQAKRRGCSNLPADSSDSTDDKELPPSQNKMSSSCFEDR
VRSHAGSSNEEESSSGSMEDIESDFSGSNSSESVSDSSQTEPDMDKEMVVFSDVAVPIEAEQDVLGQPDAPAQHASTCSDESDGSMSSDDMDNLYHDDLF
LANEAVSKWQLKGKRNIRYLTQKPVNMEYGKGSNGASHGTFYRMKGSISSQRAYGSHDANLGRKYIGSKPNCPGNRGYSYSSRLASRDQNNTGRNMIEWE
GMGLEDQHTFRRHWEDRGEHSNPIFAGHHHFGGRARSMLIDVDLKVKSSYQKDRVPIVSLISKFDGKAIIGHPILIEAVEDGSSETYFPLNDYYSNEAVD
HDESTSLPPAWRTARRTNSRVPRPHLSSVLGVDAGAEDIPFMDQERTVPFRKSSAGSFSYKANLVRKSLPHISRSSADKKLPRKLPKKVSLPSNQKTRTL
SSIGIKQNSVSKPMHDTSNGQMDGLIKPETSAPTTVACIPVKLVFSRLLEKINRPPSKTAIKVVVLNMDRDRQPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G03140 Tudor/PWWP/MBT superfamily pro... Potri.013G081400
[exp]
0 1
AT1G65540 LETM1-like protein (.1) Potri.008G078600
[exp]
1.00 0.8334
AT4G23000 Calcineurin-like metallo-phosp... Potri.014G034400
[exp]
2.44 0.8297
AT2G37340 RSZ33, ATRSZ33,... arginine/serine-rich zinc knuc... Potri.006G205800
[exp]
4.00 0.8307
AT5G60410 ATSIZ1, SIZ1 DNA-binding protein with MIZ/S... Potri.009G015000
[exp]
6.32 0.8259
AT3G02890 RING/FYVE/PHD zinc finger supe... Potri.003G091000
[exp]
10.09 0.7989
AT3G54350 FHA EMB1967 embryo defective 1967, Forkhea... Potri.002G028300
[exp]
11.13 0.8278
AT1G05840 Eukaryotic aspartyl protease f... Potri.014G146400
[exp]
12.32 0.7645
AT5G13590 unknown protein Potri.010G213800
[exp]
14.14 0.7846
AT2G27100 C2H2ZnF SE C2H2 zinc-finger protein SERRA... Potri.009G158600
[exp]
16.70 0.8167
AT2G15900 Phox-associated domain;Phox-li... Potri.009G108300
[exp]
18.76 0.8176

Potri.013G081400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.