Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40490 318 / 3e-109 HEME2 Uroporphyrinogen decarboxylase (.1) AT3G14930 192 / 3e-60 HEME1 Uroporphyrinogen decarboxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G048900 [exp] 356 / 4e-124 AT2G40490 633 / 0.0 Uroporphyrinogen decarboxylase (.1) Potri.001G390800 [exp] 201 / 7e-63 AT3G14930 627 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Potri.011G109800 [exp] 77 / 1e-16 AT3G14930 386 / 2e-134 Uroporphyrinogen decarboxylase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030544 [exp] 346 / 8e-120 AT2G40490 619 / 0.0 Uroporphyrinogen decarboxylase (.1) Lus10012892 [exp] 345 / 2e-119 AT2G40490 621 / 0.0 Uroporphyrinogen decarboxylase (.1) Lus10043079 [exp] 196 / 2e-60 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3) Lus10011170 [exp] 194 / 3e-60 AT3G14930 608 / 0.0 Uroporphyrinogen decarboxylase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0160 [poplar] [flax] Methionine_synt PF01208 [poplar] [flax] URO-D Uroporphyrinogen decarboxylase (URO-D)
Representative CDS sequence Show only first row Show all	>Potri.013G083200.1 pacid=42812348 polypeptide=Potri.013G083200.1.p locus=Potri.013G083200 ID=Potri.013G083200.1.v4.1 annot-version=v4.1 ATGAATTATCTGGTAGAAAACAAAGCTGCAGGGCTGGGCTTTGTAGGGGCTCCTTTGACCCTTGCTTCATATGTAGTGGAAGGTGGTTCGTCAAAGCACT TTACCAAAGTAAAGAGATTAGCTTTCTCCCAGCCCAAGATTCCCCACGAATTACTTCAGACCTCTATGGCAAAATACATTCAATATCAAGCTGACAGTGG AGCTCAAACTGTTCAAATCTTTGCCTCGTGGGCCACAGAACTTAGCCCTGTGGATTTTGAGGAGTTTAGTCTTCCATACTTGAAGCAGATTGTGGACACT GTGAATCAATCCCATCCAAATCTCCCACTAATCCTTCATGCCAGCGGATCTGGAGGCTTGCTTGAGCGGCTAGCTTTGACAGATGTAGATGTTGTTAGCA TGGATTGGTCAGTTGATATGGCTGAAGGTAGGAGGCGACTGGGGCCTGATGTAGCAGTTCAGGGAAATGTAGATCCTGGTGTTTTATTTCGGTCAAAGGA ATTCATAACTAATCGAATCAATGATGTCGTCAGAAAAGCCGGTAAAGGAAAACATATACTGAATCTTGGTCATGGAATTGTAGTAGGCACACCTGAGGAG AATGTTGCTCATTTTCTTGAGGTTGCTAAAAGAATCAGATAA
AA sequence Show only first row Show all	>Potri.013G083200.1 pacid=42812348 polypeptide=Potri.013G083200.1.p locus=Potri.013G083200 ID=Potri.013G083200.1.v4.1 annot-version=v4.1 MNYLVENKAAGLGFVGAPLTLASYVVEGGSSKHFTKVKRLAFSQPKIPHELLQTSMAKYIQYQADSGAQTVQIFASWATELSPVDFEEFSLPYLKQIVDT VNQSHPNLPLILHASGSGGLLERLALTDVDVVSMDWSVDMAEGRRRLGPDVAVQGNVDPGVLFRSKEFITNRINDVVRKAGKGKHILNLGHGIVVGTPEE NVAHFLEVAKRIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40490		HEME2	Uroporphyrinogen decarboxylase...		Potri.013G083200 [exp]	0	1
AT3G15220			Protein kinase superfamily pro...		Potri.001G397600 [exp]	17.14	0.8194
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.001G099900 [exp]	27.71	0.7384
AT4G37860			SPT2 chromatin protein (.1)		Potri.001G257300 [exp]	32.87	0.7772
AT2G28410			unknown protein		Potri.009G013800 [exp]	51.72	0.7432
AT4G02550			unknown protein		Potri.006G146100 [exp]	66.07	0.7673
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.002G007201 [exp]	106.75	0.7520
					Potri.012G060751 [exp]	111.98	0.7608
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.018G048600 [exp]	117.26	0.7627	Pt-GPA1.1
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.011G164700 [exp]	119.39	0.7047
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.006G269800 [exp]	135.09	0.7525

Compare expression of checked genes

Potri.013G083200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.