Plant FIBer expression Database

Potri.013G083500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05300 44 / 1e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G134100
[exp]
42 / 3e-06 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.013G083500.1 pacid=42811643 polypeptide=Potri.013G083500.1.p locus=Potri.013G083500 ID=Potri.013G083500.1.v4.1 annot-version=v4.1
ATGGCAAACCCAGCGAAATCCGGAAAAAATCTCAAACCAATTCTCTTCTTTTTCATCATCGTATCCCTATCTACTTCATCATCAGCCAGACCACTATATA
CCACTCTCTTGCAGAGCCTAACAGCAACAGAATCAGCTCTTCCCATGGAAAACATGGATGATGTGTATGTGAATCCCACCATGGAGAAAGATTCTAAGCA
TGTTTTACCATGCCACATGGAAATCGGCGAGGGGTCCAATATCAGATCAACAAGACTCGCCGGTAAATTTGGACCCATGATTCTGAATGTGCTCCCAAAG
GGAACAATACCACCATCTGGACCAAGCAAAGGAGGCAACAGCCTTAACGATTAA
AA sequence
>Potri.013G083500.1 pacid=42811643 polypeptide=Potri.013G083500.1.p locus=Potri.013G083500 ID=Potri.013G083500.1.v4.1 annot-version=v4.1
MANPAKSGKNLKPILFFFIIVSLSTSSSARPLYTTLLQSLTATESALPMENMDDVYVNPTMEKDSKHVLPCHMEIGEGSNIRSTRLAGKFGPMILNVLPK
GTIPPSGPSKGGNSLND

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05300 unknown protein Potri.013G083500
[exp]
0 1
AT2G32300 UCC1 uclacyanin 1 (.1) Potri.018G129200
[exp]
4.12 0.9187
AT1G58440 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(... Potri.012G121412
[exp]
6.00 0.9074
AT2G27660 Cysteine/Histidine-rich C1 dom... Potri.012G038400
[exp]
6.48 0.8982
AT1G35210 unknown protein Potri.002G100500
[exp]
8.36 0.8942
AT5G42440 Protein kinase superfamily pro... Potri.002G065400
[exp]
8.94 0.8951
AT3G55950 CCR3, ATCRR3 CRINKLY4 related 3 (.1) Potri.010G188600
[exp]
10.53 0.8126
AT5G25930 Protein kinase family protein ... Potri.006G235800
[exp]
13.00 0.8856
AT1G28480 roxy19, GRX480 Thioredoxin superfamily protei... Potri.017G017300
[exp]
14.69 0.8723 PtrGrx3
AT2G01670 ATNUDT17 nudix hydrolase homolog 17 (.1... Potri.008G134000
[exp]
15.16 0.8877
AT2G26530 AR781 Protein of unknown function (D... Potri.014G034900
[exp]
16.97 0.8926 AR781.2

Potri.013G083500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.