Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) AT5G58400 409 / 3e-144 Peroxidase superfamily protein (.1) AT5G58390 399 / 3e-140 Peroxidase superfamily protein (.1) AT1G14550 341 / 2e-117 Peroxidase superfamily protein (.1) AT1G14540 332 / 5e-114 Peroxidase superfamily protein (.1) AT5G06720 331 / 3e-113 ATPA2 peroxidase 2 (.1) AT5G06730 326 / 6e-111 Peroxidase superfamily protein (.1) AT2G18150 323 / 6e-110 Peroxidase superfamily protein (.1) AT4G36430 322 / 9e-110 Peroxidase superfamily protein (.1) AT2G18140 320 / 9e-109 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G156500 [exp] 466 / 2e-166 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.013G156400 [exp] 427 / 1e-150 AT5G05340 412 / 1e-144 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 414 / 3e-146 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 401 / 5e-141 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 386 / 4e-135 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1) Potri.001G458700 [exp] 384 / 3e-134 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 380 / 8e-133 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 378 / 5e-132 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 378 / 7e-132 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034207 [exp] 501 / 2e-180 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10006534 [exp] 408 / 1e-143 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10000346 [exp] 409 / 6e-143 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10030148 [exp] 398 / 3e-140 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10030149 [exp] 400 / 5e-140 AT5G05340 405 / 8e-142 Peroxidase superfamily protein (.1) Lus10009932 [exp] 402 / 1e-139 AT5G05340 419 / 6e-146 Peroxidase superfamily protein (.1) Lus10009934 [exp] 389 / 1e-136 AT5G05340 372 / 5e-130 Peroxidase superfamily protein (.1) Lus10032786 [exp] 386 / 5e-135 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 382 / 1e-133 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10009936 [exp] 379 / 4e-132 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.013G083600.1 pacid=42812466 polypeptide=Potri.013G083600.1.p locus=Potri.013G083600 ID=Potri.013G083600.1.v4.1 annot-version=v4.1 ATGGATTCTTCGTCATTTTCCAAAGCCATTGTAACCTTGGCCATCCTAGTTATGCTCTCCATGGGGAGCTCCAATGCTCAGCTTTCAATAGATTTCTACT CCAAATCTTGCCCACATCTCCTTTCAACAGTTAAACCTGTTGTTCAATCTGCCATAAACAAAGAAGCACGTATGGGTGCATCAATTCTTCGTTTATTCTT CCACGACTGTTTTGTTAATGGATGTGATGGATCACTTTTACTTGATGACACGTCTTCTTTCACCGGAGAGAAAAATGCAGCTCCAAACAAGAATTCTGCG AGAGGATTTGAGGTCATTGACAACATAAAGTCCGCAGTTGAGAAAGCATGTCCTGGTGTGGTCTCATGTGCTGATATACTGGCCATTGCTGCTAGAGACT CCACTGTTATTCTTGGAGGACCCGAATGGGACGTTAAACTTGGAAGGAGAGATGCAAGAACTGCGAGCCAGGCTGCTGCCAACAATAGCATTCCACGTCC AACTTCTAACTTGAACCAGCTCATTTCTAGATTCAATGCTCTTGGCCTGTCCACCAGAGATATGGTGGCTTTATCTGGTTCCCACACAATTGGACAAGCA AGATGCACAAACTTTAGGGCACGCATATATAATGAGACCACCATAGACAGTTCCTTGGCTCAGACAAGAAGGTCAAACTGCCCACGTACTTCTGGCTCGG GGGACAACAACTTGGCACCACTTGATTTGCAAACTCCTACACGTTTTGAGAACAATTATTACAAGAACTTGATTAACAGGAGGGGCTTGCTCCATTCTGA TCAACAGTTGTTCAATGGAGGATCCACTGATTCAATAGTCAGTACCTATAGCTCCAATGAAAACACCTTCAGATCAGATTTTGTTGCTGGCATGATCAAG ATGGGAGATATCAGGCCTCTCACTGGATCCAGAGGAGAGATTAGAAATAATTGCAGGAGGATCAACTAA
AA sequence Show only first row Show all	>Potri.013G083600.1 pacid=42812466 polypeptide=Potri.013G083600.1.p locus=Potri.013G083600 ID=Potri.013G083600.1.v4.1 annot-version=v4.1 MDSSSFSKAIVTLAILVMLSMGSSNAQLSIDFYSKSCPHLLSTVKPVVQSAINKEARMGASILRLFFHDCFVNGCDGSLLLDDTSSFTGEKNAAPNKNSA RGFEVIDNIKSAVEKACPGVVSCADILAIAARDSTVILGGPEWDVKLGRRDARTASQAAANNSIPRPTSNLNQLISRFNALGLSTRDMVALSGSHTIGQA RCTNFRARIYNETTIDSSLAQTRRSNCPRTSGSGDNNLAPLDLQTPTRFENNYYKNLINRRGLLHSDQQLFNGGSTDSIVSTYSSNENTFRSDFVAGMIK MGDIRPLTGSRGEIRNNCRRIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05340			Peroxidase superfamily protein...		Potri.013G083600 [exp]	0	1
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.004G033100 [exp]	1.41	0.9355	MYB.53
					Potri.006G240450 [exp]	2.82	0.8762
AT4G18170	WRKY	ATWRKY28, WRKY2...	WRKY DNA-binding protein 28 (....		Potri.005G203200 [exp]	3.16	0.8932
AT5G24080			Protein kinase superfamily pro...		Potri.012G034901 [exp]	7.93	0.8761
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.016G046500 [exp]	8.12	0.8400
AT2G42560			late embryogenesis abundant do...		Potri.013G118600 [exp]	8.12	0.8893
AT4G03620			myosin heavy chain-related (.1...		Potri.011G091700 [exp]	8.36	0.8589
AT2G28690			Protein of unknown function (D...		Potri.001G235200 [exp]	8.48	0.8650
					Potri.010G072200 [exp]	9.16	0.8839
					Potri.010G134450 [exp]	10.00	0.8802

Compare expression of checked genes

Potri.013G083600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.