Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56230 305 / 2e-104 BTB/POZ domain-containing protein (.1) AT1G01640 184 / 6e-58 BTB/POZ domain-containing protein (.1.2) AT4G04090 112 / 2e-30 BTB/POZ domain-containing protein (.1) AT2G40450 112 / 3e-30 BTB/POZ domain-containing protein (.1) AT5G48510 103 / 9e-27 BTB/POZ domain-containing protein (.1) AT2G05330 97 / 3e-24 BTB/POZ domain-containing protein (.1) AT2G40440 84 / 2e-19 BTB/POZ domain-containing protein (.1) AT1G21780 75 / 3e-15 BTB/POZ domain-containing protein (.1.2) AT4G08455 73 / 3e-15 BTB/POZ domain-containing protein (.1) AT3G29740 62 / 3e-12 BTB/POZ domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G183600 [exp] 77 / 2e-16 AT4G08455 342 / 2e-119 BTB/POZ domain-containing protein (.1) Potri.002G077000 [exp] 76 / 9e-16 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1) Potri.001G468700 [exp] 72 / 2e-14 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.002G082800 [exp] 63 / 2e-11 AT1G21780 535 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.005G178400 [exp] 62 / 6e-11 AT1G21780 543 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.012G091400 [exp] 57 / 3e-09 AT5G63160 404 / 7e-141 BTB and TAZ domain protein 1 (.1) Potri.015G087700 [exp] 56 / 8e-09 AT5G63160 404 / 8e-141 BTB and TAZ domain protein 1 (.1) Potri.019G039500 [exp] 54 / 6e-08 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.007G140400 [exp] 51 / 4e-07 AT1G05690 407 / 3e-141 BTB and TAZ domain protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010216 [exp] 150 / 8e-45 AT3G56230 132 / 3e-38 BTB/POZ domain-containing protein (.1) Lus10017414 [exp] 124 / 2e-34 AT3G56230 102 / 3e-26 BTB/POZ domain-containing protein (.1) Lus10042763 [exp] 74 / 3e-15 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10008348 [exp] 74 / 5e-15 AT1G55760 516 / 0.0 BTB/POZ domain-containing protein (.1) Lus10029732 [exp] 72 / 1e-14 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10042717 [exp] 66 / 5e-12 AT1G21780 557 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10042583 [exp] 66 / 6e-12 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10029677 [exp] 66 / 6e-12 AT1G21780 538 / 0.0 BTB/POZ domain-containing protein (.1.2) Lus10027101 [exp] 64 / 2e-11 AT1G55760 389 / 3e-136 BTB/POZ domain-containing protein (.1) Lus10022039 [exp] 61 / 3e-10 AT5G13060 821 / 0.0 ARMADILLO BTB protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Potri.013G083800.2 pacid=42812415 polypeptide=Potri.013G083800.2.p locus=Potri.013G083800 ID=Potri.013G083800.2.v4.1 annot-version=v4.1 ATGGACTGCTCAATTTGTTGCTCTATGCCATTGATCTTAAGGCCTCCAAGGAATACCATTTGCGGAGCATGCTACGAGGGAGCTAAGAGCGTCATCACCT TGATGAACAAGCTTGAAAGTGATGAAACAGCTGACAAGGCCACCAATTCTCTACCTTCTTCGCCAAATCCGTGTAAGCCTCAGCCACTTGCTAATATTCC AAGATGGATGATTAGTATGAAGGATAGAGAATCTGAACTGAATGAGAAGATAAGTTTTCTCAGTAGCTTTATTGCCTTATTTAAAGATCAAATTCTCACG GACATACAACTCAAGCCTGGCAATGATGGGCCTTCCATATCTGCACACAGAGCATTACTGGCAGCAAGATCTGAAATATTTAAGAACATGCTGGACTCAG ATGCCTACAAAGCTCCTGCAAGCGACACCATAATGCTCCCTGAATTGAACCATCAAGAGCTTGAGTCTCTATTAGAATTTCTTTACAGTGGAAACTTGCC TAGCGAAAAGCTGGAGAAGCATGTCTACTCATTGACCCTTGCAGCTGACAAATATGATATTCCATACCTGCTCAAATTTTGCGAAAGGCATATGCTCAGA TTCCTGAACTCATCTAATGCTCTTGACGTGTTAGAAATCTCGGATACATGTTCCAACAAAACACTAAAGGAGACTGCCTTGAATTTCATTGTAAAAAACA TGGAGGATGTAGTTTTTTCTACTAAATATGAAGCTTTTGTACCGGAGAACCCACATTTAGCTGTGCAGATTACGAGGGCTCTTTTGATGGATGTCAAAAA TAGAAGAAATAGTGGAGTTTGA
AA sequence Show only first row Show all	>Potri.013G083800.2 pacid=42812415 polypeptide=Potri.013G083800.2.p locus=Potri.013G083800 ID=Potri.013G083800.2.v4.1 annot-version=v4.1 MDCSICCSMPLILRPPRNTICGACYEGAKSVITLMNKLESDETADKATNSLPSSPNPCKPQPLANIPRWMISMKDRESELNEKISFLSSFIALFKDQILT DIQLKPGNDGPSISAHRALLAARSEIFKNMLDSDAYKAPASDTIMLPELNHQELESLLEFLYSGNLPSEKLEKHVYSLTLAADKYDIPYLLKFCERHMLR FLNSSNALDVLEISDTCSNKTLKETALNFIVKNMEDVVFSTKYEAFVPENPHLAVQITRALLMDVKNRRNSGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	0	1
AT3G24840			Sec14p-like phosphatidylinosit...		Potri.002G243000 [exp]	1.41	0.9612
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	1.41	0.9719
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.006G131000 [exp]	3.87	0.9602
AT4G38660			Pathogenesis-related thaumatin...		Potri.002G020400 [exp]	4.47	0.9331
AT2G28315			Nucleotide/sugar transporter f...		Potri.004G211900 [exp]	5.29	0.9563
AT5G43100			Eukaryotic aspartyl protease f...		Potri.005G144600 [exp]	6.00	0.9543
AT1G48850		EMB1144	embryo defective 1144, chorism...		Potri.010G221600 [exp]	8.24	0.8992
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	8.36	0.9562
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Potri.001G237200 [exp]	8.48	0.9398
AT1G67510			Leucine-rich repeat protein ki...		Potri.010G058200 [exp]	8.48	0.9267

Compare expression of checked genes

Potri.013G083800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.