Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30300 242 / 2e-73 Major facilitator superfamily protein (.1) AT5G45275 218 / 8e-64 Major facilitator superfamily protein (.1) AT4G19450 216 / 5e-63 Major facilitator superfamily protein (.1) AT3G01630 206 / 2e-59 Major facilitator superfamily protein (.1) AT1G31470 206 / 2e-59 NFD4 NUCLEAR FUSION DEFECTIVE 4, Major facilitator superfamily protein (.1) AT4G34950 178 / 4e-49 Major facilitator superfamily protein (.1) AT1G80530 128 / 2e-31 Major facilitator superfamily protein (.1) AT5G50520 115 / 2e-27 Major facilitator superfamily protein (.1) AT5G50630 115 / 2e-27 Major facilitator superfamily protein (.1) AT2G28120 108 / 8e-25 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154000 [exp] 298 / 8e-95 AT2G30300 380 / 4e-127 Major facilitator superfamily protein (.1) Potri.019G126700 [exp] 296 / 9e-94 AT2G30300 427 / 4e-145 Major facilitator superfamily protein (.1) Potri.003G105600 [exp] 238 / 2e-71 AT4G19450 734 / 0.0 Major facilitator superfamily protein (.1) Potri.001G128200 [exp] 239 / 4e-71 AT4G19450 774 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 195 / 3e-55 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 193 / 1e-54 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 166 / 7e-45 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 153 / 6e-40 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 139 / 2e-35 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026422 [exp] 254 / 2e-77 AT2G30300 379 / 5e-126 Major facilitator superfamily protein (.1) Lus10015469 [exp] 250 / 5e-76 AT2G30300 396 / 5e-133 Major facilitator superfamily protein (.1) Lus10034738 [exp] 200 / 2e-57 AT4G19450 691 / 0.0 Major facilitator superfamily protein (.1) Lus10015470 [exp] 183 / 8e-51 AT2G30300 351 / 2e-115 Major facilitator superfamily protein (.1) Lus10034491 [exp] 168 / 2e-45 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 154 / 2e-40 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 152 / 1e-39 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 150 / 7e-39 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 150 / 7e-39 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 134 / 2e-33 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.013G084000.1 pacid=42812643 polypeptide=Potri.013G084000.1.p locus=Potri.013G084000 ID=Potri.013G084000.1.v4.1 annot-version=v4.1 ATGAGCAATAATCAATTGAAGTTCAGACTGTCATCATGGCTAACCTTGGGTTGCATTACTTTGCTACAAGCCTTAAGTGCCCCCCGCTTCATTTTCTCTG CTTGCGCATCCCTGATGGAACAAAATTACCACATCTCACATGTGCAACTCAACAATCTAATTGTTGCTTCAGAAACAGGAAGGTTATTTGGTTTCGTATC GACAGCCGCTGCCACCTGTTTTCCTGCATGGATGATCCTATTCATTGGCCTGGTTTTTGGTTTGGTTGGTTATGGCGTGCAGTGCTTTTGTATTTCACAT AGAATTCCTGCTCTATCTTTTTGGCAAGCTTTATTGCTAAATATTCTTGCAGGGAACAGCAGCTGTTGGATCAATACTTACTGTCAATTGTTAGCCACAA GAAACTTCAAGGACAGTTATCGGACGATAGTCGAAATAACATCAACTTATTCAGGGTTGAGTGGAAAGATATTGACTTCTTTAGTCGAAGGAATTGAAGG AAGGAAAGGCTCTACAAATTCCAGTATTTACCTCCTCTTGACTTGCCTGGTTCCTGTGGCCGCTGGGTTAATTGTTGCTCTCGTTCATAGTTGTCTCGAG TTCATGGAATATGGGGACTCAGATGTATTTCCAGCCGTCTTCGTTCTCATCATTGCAACTGGAGTGTATACAGTGATCGAATCCGTTGCACCATTTTTCG GGTTTGTGTCCTTGCGATTACGCGCAGTGATTTTAGCACTGGTGTTAACCATACCGTTTAAAGTTGCACTATTGACAGCTGCTGCAGACTGGTTTTCAGC AGAGAAATATCACTCCCAGGTGACTCGAACGGAGTCGAATGACTCTTTCGAATCAAACCCCGAAAAGGTATCCAAAGAAGTCAAGATTGCAATAGGCGAA GAAAGAGAAGCTGATCAAAAGGCAGGAGGGGAGGTTGACAGTGACGACAAGGGCTTGTTTAAAGCAGGAAATGATTCTGGTATGAAACAGCTACTGTTAA ATGTGGATTTCTGGATGTTCTATTTGGTGAATGCATGTGGACCTACGCTGGGAATGGTTTATTTAAACAACCTAGAGAGAATCACCCAGTCTCGCAGCAT GGGCGAAGCATCATTTTTATTGGAAATATCTTCTGCGTTTGGATTTTTTGGAAGGATGTTGTCTATTATGTTCCACTGGTATACAAGGGAAAAATCGGTA ATAGCCAACCCAGCGTTGACAGTGCTCCTAATGATCCCCATGCCCATTGCTGTCTTCTTGCTCCTCGACAGCAACAGATGTTTATACATCAGCACCGGAA TCTTGGGAACCTGTTCAGGAGCCTTAATTGCTATAAATTCAATGACAACGTCTGAGCTGTTCGGCTCCGAGAACTTGGCTGCGAAACAAACCATTGTTCT AACCAACATTCCCTTGGGCTCTCTGCTTTTTGGGTACTTGGCAGCTATTAACTTACAAAGCGAAGGTGCTGGCGATCATGGAGTATGCATAGGGCTGCAA TGCTATCACAAAACTTTCATCATCTGGGGATCCATTTGCTTCATAGGAACAATTCTAAGTTTTCTTCTGCATCTTCGCACGCAGAACTTCTATTCTCAAA AATCCTAG
AA sequence Show only first row Show all	>Potri.013G084000.1 pacid=42812643 polypeptide=Potri.013G084000.1.p locus=Potri.013G084000 ID=Potri.013G084000.1.v4.1 annot-version=v4.1 MSNNQLKFRLSSWLTLGCITLLQALSAPRFIFSACASLMEQNYHISHVQLNNLIVASETGRLFGFVSTAAATCFPAWMILFIGLVFGLVGYGVQCFCISH RIPALSFWQALLLNILAGNSSCWINTYCQLLATRNFKDSYRTIVEITSTYSGLSGKILTSLVEGIEGRKGSTNSSIYLLLTCLVPVAAGLIVALVHSCLE FMEYGDSDVFPAVFVLIIATGVYTVIESVAPFFGFVSLRLRAVILALVLTIPFKVALLTAAADWFSAEKYHSQVTRTESNDSFESNPEKVSKEVKIAIGE EREADQKAGGEVDSDDKGLFKAGNDSGMKQLLLNVDFWMFYLVNACGPTLGMVYLNNLERITQSRSMGEASFLLEISSAFGFFGRMLSIMFHWYTREKSV IANPALTVLLMIPMPIAVFLLLDSNRCLYISTGILGTCSGALIAINSMTTSELFGSENLAAKQTIVLTNIPLGSLLFGYLAAINLQSEGAGDHGVCIGLQ CYHKTFIIWGSICFIGTILSFLLHLRTQNFYSQKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30300			Major facilitator superfamily ...		Potri.013G084000 [exp]	0	1
AT2G34610			unknown protein		Potri.011G083600 [exp]	2.00	0.8595
AT1G43760			DNAse I-like superfamily prote...		Potri.002G209244 [exp]	6.70	0.6067
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.006G033600 [exp]	10.95	0.6200
					Potri.004G067750 [exp]	26.38	0.6083
AT3G23200			Uncharacterised protein family...		Potri.010G073000 [exp]	28.54	0.6300
					Potri.004G213101 [exp]	30.19	0.4519
					Potri.001G473250 [exp]	30.46	0.5423
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107100 [exp]	40.14	0.4447
AT4G21020			Late embryogenesis abundant pr...		Potri.004G046000 [exp]	43.70	0.5856	Pt-PM32.1
AT1G48840			Plant protein of unknown funct...		Potri.012G055800 [exp]	55.58	0.5643

Compare expression of checked genes

Potri.013G084000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.