Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03330 446 / 2e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03350 144 / 8e-41 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G47350 94 / 7e-22 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT3G47360 86 / 4e-19 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT3G55310 82 / 1e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50690 82 / 2e-17 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 82 / 2e-17 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT1G24470 81 / 5e-17 ATKCR2, KCR2 beta-ketoacyl reductase 2 (.1) AT3G03980 79 / 8e-17 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G67730 79 / 2e-16 ATKCR1, YBR159, KCR1 beta-ketoacyl reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G101900 [exp] 98 / 2e-23 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G100000 [exp] 95 / 4e-22 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G102000 [exp] 95 / 4e-22 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.015G099900 [exp] 94 / 9e-22 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048900 [exp] 85 / 2e-18 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048800 [exp] 84 / 3e-18 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.006G089700 [exp] 82 / 6e-18 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033500 [exp] 80 / 3e-17 AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G052300 [exp] 78 / 3e-16 AT1G67730 449 / 7e-160 beta-ketoacyl reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026851 [exp] 468 / 2e-167 AT3G03330 439 / 7e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012575 [exp] 81 / 4e-17 AT3G26770 353 / 1e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022441 [exp] 80 / 1e-16 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10016430 [exp] 78 / 3e-16 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041518 [exp] 79 / 4e-16 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010874 [exp] 77 / 4e-16 AT5G06060 295 / 8e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 77 / 7e-16 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020265 [exp] 76 / 9e-16 AT3G03980 359 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016748 [exp] 78 / 1e-15 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10001560 [exp] 77 / 1e-15 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.013G084100.3 pacid=42811109 polypeptide=Potri.013G084100.3.p locus=Potri.013G084100 ID=Potri.013G084100.3.v4.1 annot-version=v4.1 ATGATCTTCATTTTTCTCTCACTTCTCCTTCTCGTTGCTTTACTCTTCAAGTTCCTCACTTCTGATGGGGATTTCACTTTGATGTCAAAGAGGCATGCCA AGCGTGAAGAAATTGAAGATAAGGTTGTTTGGATTACTGGAGCCAGCCGTGGAATAGGTGAGGTTCTTGCTAAACAACTGGCAAGTTTAGGTGCCAAACT AATTCTTTCATCACGGAATGAAGCAGAATTGGAGCGTGTCAAGAACCAACTTACTGGTAAACATGCACCTGGTGAAGTAAAGATTATACCTTTGGATTTG GCATCAGGTGAAGAGTTTCTTAAGGAGGCCGTAGAGAAAGCAGAGTCCTTTTTCTCTGGTGCTGGTGTTGATTATATGATCCACAATGCAGCTTATGAAC GACCAAAATCAACAGCTTTGGATGTGAATGAGGAAAGTCTCAAGGCTACATTCAACATCAATGTCCTTGGGCCAATATCTCTCACACGACTATTGGCATC TTCTATGCTGAGCCGGGGGCGGGGTCATTTTGTTGTGATGAGCAGTGCTGCAGGCAAGACACCTACCCCGGGTCAGGCCATATACTCTGCTTCAAAATTT GCTCTAAATGGATACTTTCATTCCTTGCGTTCCGAGCTCTGTCAGAAAGGGATTAAGGTGACCATTGTTTGTCCTGGGCCAATAGAAACGTCAAATGGTT TTGGATCGACAACCTCAGGAAAGAAAGGTACTTTTGAGAGGAGAGTGTCGTCAGAAAGGTGTGCAGAACTGACAATCATTGCGGCAACCCATGGTTTAAA GGAAGTTTGGATATCAGACCAGCCTGTGCTAGCTGTTCTGTATTTAGTGCAGTACATGCCAACTGTTGGGTATTGGCTCATGGACAAGATTGGTGGAAAT CGATTAGCAGCTGCTGCACAAAAAGGCAATACATACTCTTTGAGCTTATTGTTTGGGAAAAAGAAAGCAACCTGA
AA sequence Show only first row Show all	>Potri.013G084100.3 pacid=42811109 polypeptide=Potri.013G084100.3.p locus=Potri.013G084100 ID=Potri.013G084100.3.v4.1 annot-version=v4.1 MIFIFLSLLLLVALLFKFLTSDGDFTLMSKRHAKREEIEDKVVWITGASRGIGEVLAKQLASLGAKLILSSRNEAELERVKNQLTGKHAPGEVKIIPLDL ASGEEFLKEAVEKAESFFSGAGVDYMIHNAAYERPKSTALDVNEESLKATFNINVLGPISLTRLLASSMLSRGRGHFVVMSSAAGKTPTPGQAIYSASKF ALNGYFHSLRSELCQKGIKVTIVCPGPIETSNGFGSTTSGKKGTFERRVSSERCAELTIIAATHGLKEVWISDQPVLAVLYLVQYMPTVGYWLMDKIGGN RLAAAAQKGNTYSLSLLFGKKKAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03330			NAD(P)-binding Rossmann-fold s...		Potri.013G084100 [exp]	0	1
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.001G336500 [exp]	1.41	0.7277
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.009G129500 [exp]	2.64	0.7836	TIM.2
AT5G35080			unknown protein		Potri.006G061600 [exp]	6.63	0.7015
AT1G53000		AtCKS, KDSB	CMP-KDO synthetase, Nucleotide...		Potri.001G400900 [exp]	7.07	0.6877
AT2G04340			unknown protein		Potri.014G169500 [exp]	7.93	0.7045
AT3G48590	CCAAT	NF-YC1, ATHAP5A...	"nuclear factor Y, subunit C1"...		Potri.015G097400 [exp]	8.06	0.7007
AT1G03250			unknown protein		Potri.019G046400 [exp]	9.48	0.6894
AT1G01230			ORMDL family protein (.1)		Potri.014G101000 [exp]	10.09	0.6933
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.002G175700 [exp]	13.41	0.6660
AT5G05710			Pleckstrin homology (PH) domai...		Potri.008G066700 [exp]	13.49	0.6541

Compare expression of checked genes

Potri.013G084100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.