Plant FIBer expression Database

Potri.013G084300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43945 381 / 2e-134 unknown protein
AT3G59870 373 / 2e-131 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020220
[exp]
387 / 8e-137 AT2G43945 333 / 1e-115 unknown protein
Lus10026850
[exp]
379 / 6e-134 AT2G43945 331 / 2e-114 unknown protein
PFAM info
Representative CDS sequence
>Potri.013G084300.1 pacid=42812185 polypeptide=Potri.013G084300.1.p locus=Potri.013G084300 ID=Potri.013G084300.1.v4.1 annot-version=v4.1
ATGTGTACGGCCTTACCTCCTGCTATGAGGCTTTTGTTAACCACTTCTACTGTTACAGGTTTTCCCTCCAAATCCCTAAGAACAACAACAATCCCTAATT
TGAACCAATCATGTCTTGCAAGAAGAAACAGCCTCTCTTTCTCTAAACCAACGTGGCTTTGTGGACATAAGAGGAATGATCAGGAAATGGATAGTTGGAA
AGCTGAAGAGGAGAACATTGAGTGCATGTTTGGTTCAAATGAAGATACTGGCAGCCAAATTCCAACACAAGCCCAAACTATTGTGGAAGGATCAGGGACA
GTTGTGTTGTCAGAATTTAAACCTGTTCCTGATGTAGACTATCTACAGGAGTTATTGGCCATCCAACAACAAGGACCAAGATCTATTGGGTTTTTTGGAA
CCCGGAACATGGGCTTCATGCATCAAGAACTTATTGAGATTCTCAGTTATGCTTTGGTTATAACAAAAAACCATATTTATACATCAGGTGCATCTGGGAC
TAATGCAGCTGTTATAAGGGGTGCTTTAAGAGCAGAAAAACCTGAACTACTTACAGTAATCTTGCCTCAAAGTTTGAAAAAACAACCGCCTGAGAGCCAG
GAGCTATTGGCAAAAGTGCAGAATGTGATAGAGAAGCCTCACAATGACCATCTACCACTGATTGAAGCCAGCAGGCTGTGTAATATGGACATTATTTCCC
ATGTACAACAAGTTATTTGCTTTGCCTTCCATGATAGCAGGTTGCTCATGGAAACTTGTCAGGAGGCCAAAAATCTCCGGAAAATTGTTACTCTCTTTTA
TCTGGACTGA
AA sequence
>Potri.013G084300.1 pacid=42812185 polypeptide=Potri.013G084300.1.p locus=Potri.013G084300 ID=Potri.013G084300.1.v4.1 annot-version=v4.1
MCTALPPAMRLLLTTSTVTGFPSKSLRTTTIPNLNQSCLARRNSLSFSKPTWLCGHKRNDQEMDSWKAEEENIECMFGSNEDTGSQIPTQAQTIVEGSGT
VVLSEFKPVPDVDYLQELLAIQQQGPRSIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAEKPELLTVILPQSLKKQPPESQ
ELLAKVQNVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFYLD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43945 unknown protein Potri.013G084300
[exp]
0 1
AT2G03390 uvrB/uvrC motif-containing pro... Potri.010G161600
[exp]
1.73 0.9611
AT5G53580 AtPLR1 pyridoxal reductase 1, NAD(P)-... Potri.015G006900
[exp]
2.82 0.9501
AT4G00730 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS... Potri.014G075200
[exp]
3.46 0.9434 Pt-ANL2.2
AT5G64940 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-R... Potri.007G082500
[exp]
5.91 0.9378
AT3G11560 LETM1-like protein (.1.2.3.4) Potri.016G074900
[exp]
9.00 0.9168
AT3G51480 ATGLR3.6 glutamate receptor 3.6 (.1) Potri.005G102700
[exp]
10.67 0.9217 Pt-GLR3.5
AT2G36990 SIG6, SIGF, ATS... SIGMA FACTOR 6, RNApolymerase ... Potri.006G125700
[exp]
13.71 0.9432 SIGF.1
AT2G34960 CAT5 cationic amino acid transporte... Potri.003G154600
[exp]
15.90 0.9199 CAT5.1
AT5G53390 O-acyltransferase (WSD1-like) ... Potri.019G070975
[exp]
17.66 0.9176
AT1G07110 FKFBP, ATF2KP, ... "fructose-2,6-bisphosphatase",... Potri.001G279100
[exp]
18.33 0.9250 F2KP.3

Potri.013G084300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.