Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24706 2284 / 0 EMB2793, AtTHO2 EMBRYO DEFECTIVE 2793, THO2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054600 [exp] 3314 / 0 AT1G24706 2259 / 0.0 EMBRYO DEFECTIVE 2793, THO2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035106 [exp] 2626 / 0 AT1G24706 2224 / 0.0 EMBRYO DEFECTIVE 2793, THO2 (.1.2) Lus10031945 [exp] 2608 / 0 AT1G24706 2191 / 0.0 EMBRYO DEFECTIVE 2793, THO2 (.1.2) Lus10023155 [exp] 49 / 5e-05 AT5G16780 811 / 0.0 MERISTEM-DEFECTIVE, DEFECTIVELY ORGANIZED TRIBUTARIES 2, SART-1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11262 [poplar] [flax] Tho2 Transcription factor/nuclear export subunit protein 2
Representative CDS sequence Show only first row Show all	>Potri.013G085000.1 pacid=42812277 polypeptide=Potri.013G085000.1.p locus=Potri.013G085000 ID=Potri.013G085000.1.v4.1 annot-version=v4.1 ATGTCAACAACTCTCCCTCCCATGGAGTGTTTACACGTAACTGAAGAATTTCTCCTCGAATTAAAGAGCGGAAACCGTAGCTTCCGTCTCCCTCACCCTG TACCTATTCTTCGATTTCTCTACGAGCTATCCTGGACCTTGGTTCGAGGAGAATTGCCGTTTCAGAAGTGCAAAGCTGCTTTGGATTCTGTGGAGTTTGT TGATAAAATGTCTGCTGTAGGGTTGGGTTCGAATTTCGCTGATATCATTACTCAAATGGCTCAAGATCTTACAATGTCTGGAGAGTACCGATCTCGTCTC ATAAAGCTGGCAAAATGGCTAGTTGAATCTGCGTTGGTCCCATTGAGGTTTTTCCAAGAGCGTTGTGAGGAGGAATTTTTATGGGAAGCTGAAATGATAA AGATAAAGGCTCAAGACTTGAAGGGCAAAGAGGTCAGGGTAAATACTCGTCTTCTTTATCAGCAAACAAAATTTAACCTTCTCCGTGAAGAGAGTGAGGG CTATGCCAAACTGGTTACTCTTCTCTGTCGAGGTTCTGAAGATACAGCTGAAAATACATCAGCAGCGACAATAGGCATCATTAAGTCATTGATCGGTCAT TTTGATCTGGACCCAAATCGTGTTTTCGACATTGTTTTAGAGTGTTTTGAACTTCAGCCTGATAGCAATGTCTTTTTGGAACTGATTCCCATATTTCCTA AGTCGCATGCATCACAAATTCTTGGTTTTAAGTTTCAGTATTATCAGCGAATGGAATTAAATAGCCCTGTACCATTTGGGCTCTTTAAGCTTACAGCCTT ACTAGTGAAGGAAGAGTTCATTGATCTTGATAGTATATGTGCACATTTACTCCCTAAGGATGATGAGGCTTTTGAGCATTATAACACGTTTTCTTCCAAA CGATTGGATGCGGCCTACAAAATTGGAAAAATAAATCTGGCTGCTACTGGAAAGGACCTCATGGATGATGAGAAGCAAGGAGATGTGACAGTAGATCTTT TTGCTGCCTTAGACATGGAAACTGAGGCAGTAGCTGAACAATTCTCTGATCTTGAAAAAAATCAAACTTTGGGCTTGCTGACTGGTTTCCTTTCTGTGGA TGACTGGTATCATGCCCATATACTTTTCAAACGTCTCTCTCCTCTAAATCCTGTTGCACATACTCAAATATGTGGTGGCTTGTTTAGGCTCATTGAAAAG ACGATCTCATCAGCATATAATATTATTCGTCAACCACATGTTCAAAATTGTGGGTCTCCAGCAGTTGCTGGTATTGATGCCATGGATGTGACAAGTTCTT CAGGCCATGTCTCTTTAATTGATCTTCCCAAAGAATTTTTTCAGATGCTTGTAACAGTTGGACCTTATCTTTACCGTGATACGTTATTGCTGCAGAAGGT TTGTAGAGTGTTAAGAGGTTACTATATGTCTGCACTTGAGCTTGTAGATAGTGGTGATGGAGCTCTAAATGGTGAATCTCTTATTCCTAGAAATCGAGTT CTTCGTTTGCACCTAAGGGAAGGTAGGTCAATGGTTGAGGAAGCCCTGGGAGCATGTTTACTTCCTTCTTTACAGTTGGTACCTGCAAATCCAGCAGCTG GGCAGGAGATCTGGGAAGTAATGAGTCTCCTTCCATATGAGGTGCGATATCGTTTATATGGTGAATGGGAAAAAGATGATGAGCGGAATCCATTGGTTTT GGCTGCAAGGCAAACAGCCAAGTTGGATACTAGAAGGATATTGAAAAGGCTTGCGAAGGAAAATTTGAAGCAGCTGGGTAGGATGGTTGCAAAATTAGCG CATGCTAACCCGATGACTGTCCTTCGAACTATTGTTCATCAGATTGAGGCATACAGGGATATGATCACTCCTGTTGTGGATGCTTTCAAGTATTTGACAC AGCTTGAGTATGATATCTTGGAATATGTTGTAATTGAGCGGTTAGCACAAGGTGGTCGTGATAAGCTCAAGGATGATGGCCTTAATTTGTCAGACTGGCT TCAATCACTGGCTTCATTCTGGGGTCACCTGTGTAAGAAGTACCCATCTATGGAATTGAGAGGCCTTTTCCAGTATTTAGTGAACCAGTTGAAAAAGGGC CAGGGGATTGAGCTTGTTCTTCTGCAGGAGCTTGTTCAACAAATGGCAAATGTTCAATACACAGAAAACTTAACAGAGGAACAGTTGGATGCCATGGCAG GGAGTGAGACACTTCGGTATCAAGCTACTTCTTTTGGAGTAACACGGAATAACAAGGCGTTGTTCAAATCTACTAACAGGCTTCGAGACTCCTTGCTTCC TAAGGATGAACCAAAGCTAGCGATCCCCCTTTTGTTACTTATTGCTCAACATCGATCTGTGGTTGTCATAAATGCAGATGCTCCTTACATTAAAATGGTC AGTGAGCAGTTTGATAGGTGTCATGGAACTCTTCTTCAATATGTGGAATTCCTCTGTGGTGCTGTGACACCACCCTCTGCATATGCTCAGTTAATTCCCT CTCTTGATGATCTTGTCCACCTGTATCATCTTGATCCTGAGGTTGCATTTTTAATATACCGCCCAGTCATGAGACTCTTCAAGTGTGAGGGTAGTTTAGA GGTTTTCTGGCCCTTAGACAGCAATGAAACAGTAACTACTACAAGTGCAAACCTGGAGCCTGAAGCTAGAGAATATTCTGGCAGAGTGATTCTGGATCTT GGCTCTCTCCATAAGCCTGTAATGTGGTCAGATCTTCTTGAGACTCTGAAAACCATGTTGCCTTCAAAAGCCTGGAATAGCCTCTCACCTGATCTCTATG CCACTTTCTGGGGACTCACACTTTATGATCTATATGTCCCTAGAAACCGTTACGAGTCTGAAATTGCCAAGCAGCAAGCTGCTCTTAAAGCGCTGGAAGA GCTTTCTGATAATTCTAGTTCAGCAATTACTAAAAGGAAGAAAGAGAAGGAAAGGATTCAAGAATCTCTCGATCGTCTGACTAGTGAGCTCCATAAACAT GAAGAAAATGTTTCTTCTGTTCGTAGACGACTATCTCGTGAGAAGGACAAATGGCTGACTTCTTGTCCTGATACTTTGAAAATCAACATGGAGTTCCTTC AGCGCTGTATTTTTCCCCGTTGTACTTTCAGCATGCCGGATGCTGTATATTGTGCCATGTTTGTACATACTCTTCATTCACTTGGCACACCATTTTTCAA CACTGTAAACCACATCGATGTTCTGATATGTAAAACATTACAACCTATGATATGCTGCTGTACTGAATATGAAGCAGGTAGACTTGGGAGGTTTTTGTAT GAAACACTCAAGATTGCTTACTACTGGAAGAGTGATGAAACTATATATGAACGTGAGTGTGGAAATATGCCTGGATTTGCTGTGTATTATAGATTCCCAA ACAGCCAACGGGTTACATATGGTCAGTTCATTAAGGTACACTGGAAATGGAGTCAGAGAATGTCTCGGCTATTGATTCAGTGTCTGGAATCATCTGAGTA CATGGAAATTCGAAATGCTCTTATTTTGTTGACAAAAATTTCCGGTGTTTTTCCAGTTACTAAAAGGAGTGGTATTAACCTTGAAAAACGAGTAACTAGA ATCAAAAGTGATGAAAGGGAGGATCTCAAGGTTTTGGCTACAGGTGTTGCTGCAGCTTTGGCTGCTAGAAAGCCTTCATGGGTTACAGATGAAGAATTTG GCATGGGATATCTTGACATAAAGCCTCCATCTGTTGCATCAAAGTCTTTATCTGGAAATGTAGCAGCAGCACAAAACAGTTCTGCCCTTAATGTTTCTCA AGGTGAACCTGCTGATGGAAGAGCACTTGTAACTGGAAGCCAACATGGAGATCCTGGGAATTCAAACAGAGATCCGATATCCAGAGCAAAACATGCTGAT GGGAGGTCAGATAGAACAGAAAATATCTCACATTTGAAATCTGATCTAGGACATCAGAAATCAAAAGGTGGTTCATCAACCAATGGGTCAAATGCTCAGT CAGCTGTTTCCTCGGCTGCTGTTCCTATAGGTGCATCAAGATCAGCAGAAAATCAGAAGGGGATGGATGACTCCACAAATAGAACATTGGAGGATAGCAC TGTCAGAGTTGCTGCAAAGAACTTGGCGGAGTCTGAGTTGAAAGTTTCCACAAAGCGGCCAGTGTCTAAAACACCAAAGCAAGATGTTGTGAAAGATGAC AATAAATCTGGAAAAGGTGTTGGCCGAACTCTATCCTCATCCACAAGTGACAAAGACATCCAGGTTCATTTATCAGAGGGAAGACAAGGGGGTGCTTCTA ATGTTTCTTCTGTGCTCACATCGAATGGTAATGCTCTTTCAGTGTCTGAAAAAGTCTCTACTATGGTTACAAGAACTTCTGATTCTTATGGTGTAGAATC AAAGCCAGATAGTGGAGGTAACAAACCTATGCTAAAAGATGAAGCAACTGAAGTTGCTGATGTGCAGAAGCCACCTTCTCGACTTGTTCATTCTCCTAGG CATGATAACTCTGTTGCTGCTTCAAAGTCTAGTGATAAATTGCAAAAGAGAGCAAGTCCTGCTGAAGAACCTGACAGATTAAGTAAAAGGCAAAAAGGGG ATGTCGAATTGAGAGATTTAGAGGGTGAAGTTAAATTCTCTGAAAGAGAGAGGTCCACCGATACTCGATCTGCGGATCTTGATAAAGTGGGAAATGATGA ACATAATCTATATAGGAGCGTAGATAAACCTTTGGATAGGTCAAAAGATAAAGGTAATGATAGATATGACAGGGACCATAGGGAAAGATCAGAGCGTCCT GATAAATCCCGTGGAGATGATAGTTTAGCTGACAGATCGAGAGATAAATCAATGGAAAGATATGGAAGAGAGCTTTCGGTTGAGAGAGGGCAGGATAGGG TCGCTGATAGGAGTTTTGACAGACTAGCTGACAAAGCCAAAGATGACAGAAGCAAATTACGTTACAATGATACCTCTGCAGAAAAATCTCAGGTTGATGA TCGTTTTCATGGGCAAAACTTGCCTCCGCCACCACCTTTACCTCCTCATATGGTTCCCCAATCAGTTACTTCTGGTAGAAGAGATGAAGATGCTGACAGA AGGTTTGGAACTACCAGACATGTTCAGAGGCTTTCTCCTAGGCATGATGAGAAAGAACGAAGACGATCAGAAGAAAATTCCTTGGTTTCACAGGATGATG CAAAACGTAGAAAAGAGGATGATGTTCGTGAGAGAAAGCGAGAAGAGCGAGAGGGGCTGTCAATCAAGGTGGAAGAGAGGGAAAGAGAGAGGGAGAGGGA GAAAACCAACCTTCCGAAGGAGGAAATGGACTCCAGTGCAACTGCCAAGAGACGAAAACTTAAAAGAGATCATCTGCCGACAGGGGAAGCTGGTGAATAT TCTCCTGTTGCCCCACCACCTCCACCCCTTGGTATTGGCATTTCACATTCATATGATGGTAGGGAGAGGGGAGATAGGAAGGGGGCCATGAATCAGCGTG CAAGTTACTTGGAGGAACCTCTCATGAGGATTCATGGTAAAGATGTAGTTGGCAAGATGGGCCGCCGTGATACTGATCCTATGTATGATCGGGAATGGGA TGAGGACAAGAGGCAGAGAGCTGAACAAAAGCGGAGGCATCGCAAGTAA
AA sequence Show only first row Show all	>Potri.013G085000.1 pacid=42812277 polypeptide=Potri.013G085000.1.p locus=Potri.013G085000 ID=Potri.013G085000.1.v4.1 annot-version=v4.1 MSTTLPPMECLHVTEEFLLELKSGNRSFRLPHPVPILRFLYELSWTLVRGELPFQKCKAALDSVEFVDKMSAVGLGSNFADIITQMAQDLTMSGEYRSRL IKLAKWLVESALVPLRFFQERCEEEFLWEAEMIKIKAQDLKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRGSEDTAENTSAATIGIIKSLIGH FDLDPNRVFDIVLECFELQPDSNVFLELIPIFPKSHASQILGFKFQYYQRMELNSPVPFGLFKLTALLVKEEFIDLDSICAHLLPKDDEAFEHYNTFSSK RLDAAYKIGKINLAATGKDLMDDEKQGDVTVDLFAALDMETEAVAEQFSDLEKNQTLGLLTGFLSVDDWYHAHILFKRLSPLNPVAHTQICGGLFRLIEK TISSAYNIIRQPHVQNCGSPAVAGIDAMDVTSSSGHVSLIDLPKEFFQMLVTVGPYLYRDTLLLQKVCRVLRGYYMSALELVDSGDGALNGESLIPRNRV LRLHLREGRSMVEEALGACLLPSLQLVPANPAAGQEIWEVMSLLPYEVRYRLYGEWEKDDERNPLVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLA HANPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGRDKLKDDGLNLSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKG QGIELVLLQELVQQMANVQYTENLTEEQLDAMAGSETLRYQATSFGVTRNNKALFKSTNRLRDSLLPKDEPKLAIPLLLLIAQHRSVVVINADAPYIKMV SEQFDRCHGTLLQYVEFLCGAVTPPSAYAQLIPSLDDLVHLYHLDPEVAFLIYRPVMRLFKCEGSLEVFWPLDSNETVTTTSANLEPEAREYSGRVILDL GSLHKPVMWSDLLETLKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEIAKQQAALKALEELSDNSSSAITKRKKEKERIQESLDRLTSELHKH EENVSSVRRRLSREKDKWLTSCPDTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCCTEYEAGRLGRFLY ETLKIAYYWKSDETIYERECGNMPGFAVYYRFPNSQRVTYGQFIKVHWKWSQRMSRLLIQCLESSEYMEIRNALILLTKISGVFPVTKRSGINLEKRVTR IKSDEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLDIKPPSVASKSLSGNVAAAQNSSALNVSQGEPADGRALVTGSQHGDPGNSNRDPISRAKHAD GRSDRTENISHLKSDLGHQKSKGGSSTNGSNAQSAVSSAAVPIGASRSAENQKGMDDSTNRTLEDSTVRVAAKNLAESELKVSTKRPVSKTPKQDVVKDD NKSGKGVGRTLSSSTSDKDIQVHLSEGRQGGASNVSSVLTSNGNALSVSEKVSTMVTRTSDSYGVESKPDSGGNKPMLKDEATEVADVQKPPSRLVHSPR HDNSVAASKSSDKLQKRASPAEEPDRLSKRQKGDVELRDLEGEVKFSERERSTDTRSADLDKVGNDEHNLYRSVDKPLDRSKDKGNDRYDRDHRERSERP DKSRGDDSLADRSRDKSMERYGRELSVERGQDRVADRSFDRLADKAKDDRSKLRYNDTSAEKSQVDDRFHGQNLPPPPPLPPHMVPQSVTSGRRDEDADR RFGTTRHVQRLSPRHDEKERRRSEENSLVSQDDAKRRKEDDVRERKREEREGLSIKVEEREREREREKTNLPKEEMDSSATAKRRKLKRDHLPTGEAGEY SPVAPPPPPLGIGISHSYDGRERGDRKGAMNQRASYLEEPLMRIHGKDVVGKMGRRDTDPMYDREWDEDKRQRAEQKRRHRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	0	1
					Potri.013G071800 [exp]	1.00	0.9100
AT2G18900			Transducin/WD40 repeat-like su...		Potri.006G166500 [exp]	2.82	0.8671
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.003G086400 [exp]	3.74	0.9028
AT2G19390			unknown protein		Potri.006G146600 [exp]	4.00	0.8883
AT4G31880			unknown protein		Potri.006G263300 [exp]	4.24	0.9001
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Potri.017G092600 [exp]	7.93	0.8787
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Potri.004G229732 [exp]	8.36	0.8121
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.008G195900 [exp]	8.94	0.8862
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.006G075500 [exp]	9.38	0.8627
AT2G29200		APUM1	pumilio 1 (.1)		Potri.008G058300 [exp]	9.59	0.8520

Compare expression of checked genes

Potri.013G085000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.