Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65230 368 / 1e-128 Uncharacterized conserved protein (DUF2358) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027002 [exp] 369 / 7e-129 AT1G65230 328 / 5e-113 Uncharacterized conserved protein (DUF2358) (.1) Lus10020202 [exp] 347 / 2e-121 AT1G65230 312 / 6e-108 Uncharacterized conserved protein (DUF2358) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0051 [poplar] [flax] NTF2 PF10184 [poplar] [flax] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Potri.013G085300.1 pacid=42811573 polypeptide=Potri.013G085300.1.p locus=Potri.013G085300 ID=Potri.013G085300.1.v4.1 annot-version=v4.1 ATGAATGCTTCTGTTTCCTCTGCTCTTGCAGCCTCCTCGACTACTTCCCTTGCCACTCCTGGTAGCTTTCACCGCCAATGCTGCCGAAGTAGTAATCGTT TTATCTTCACCTGCAGGCCTTTTACATCCTCTCTTCACCACCCCTTTATACTAAGAGTAACAAATGATTCTAGTAGGACTGAACCGTCTCCAGCTGAGCC TGCCAATGAAAGCTCTGAAGCTGATAGGATAGTTAATGGAATGGACTTTGGTCAGCTTTGCAATGAGTTCGAGTGCATTAGTAGCCCACTGGTGGAATCG ACAGCCAGACAGCTTGTACGTGATATCCTCCAACTACGTGAAGGCAATCGTGCCCTTGGAACCTTCGCAGTTTCTGTCAGATATAAGGATCCAGTCAGAA GTTTTACTGGTCGTGAGAAATACAAGAGACCACTCTGGGCAACTGGTGCTCTAGATAACCCTTCTGTGACTGTACAAGAAATGATAATGCTGTCAACAAG TATCCTGAGTATCAAGTGGACAATAACAGGAAAGCCCAAATCTTTTATTGCTGGTGTGGGGGGAGATTTGATAGTTAAAGTGCATTCCAAATTCACTTTA AACCAGATCAGTGGCCAAGTGATTGAGCACGAAGAGTTCTGGGATTTGTCAGCCTCTTCAGTTGTTGATCAGGCTTTTTTCTGGACTTCTCGTAGATTAT TTGCTACAATTGAAAATGGAAAGGATTTATCTGATCTTGTGAAAAGCTTGACAAACCGTCCTTCGTCCAAAAAAGAGAACATGGAGATATATCCTGACCC TTCTGGTGATCCAACAAAGTTCTTTCAAAGGGATGACAGCTTCCAAAGAGATGCATACCAGATTGCGCTATTTCTGGCAGTCCTATATTTTGTGGTACAG TTCTTGAGGACAACCTTGTAA
AA sequence Show only first row Show all	>Potri.013G085300.1 pacid=42811573 polypeptide=Potri.013G085300.1.p locus=Potri.013G085300 ID=Potri.013G085300.1.v4.1 annot-version=v4.1 MNASVSSALAASSTTSLATPGSFHRQCCRSSNRFIFTCRPFTSSLHHPFILRVTNDSSRTEPSPAEPANESSEADRIVNGMDFGQLCNEFECISSPLVES TARQLVRDILQLREGNRALGTFAVSVRYKDPVRSFTGREKYKRPLWATGALDNPSVTVQEMIMLSTSILSIKWTITGKPKSFIAGVGGDLIVKVHSKFTL NQISGQVIEHEEFWDLSASSVVDQAFFWTSRRLFATIENGKDLSDLVKSLTNRPSSKKENMEIYPDPSGDPTKFFQRDDSFQRDAYQIALFLAVLYFVVQ FLRTTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65230			Uncharacterized conserved prot...		Potri.013G085300 [exp]	0	1
AT3G48420			Haloacid dehalogenase-like hyd...		Potri.015G088500 [exp]	1.00	0.9893
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.001G384600 [exp]	1.41	0.9891
AT3G61080			Protein kinase superfamily pro...		Potri.002G153100 [exp]	1.73	0.9848
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.011G052200 [exp]	4.00	0.9836
AT2G46820		PSI-P, TMP14, P...	THYLAKOID MEMBRANE PHOSPHOPROT...		Potri.002G180400 [exp]	5.91	0.9824	TMP14.1
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Potri.001G450800 [exp]	7.48	0.9820
AT2G36145			unknown protein		Potri.006G210000 [exp]	7.93	0.9804
AT5G14320		EMB3137	EMBRYO DEFECTIVE 3137, Ribosom...		Potri.005G172600 [exp]	8.48	0.9807
AT3G13120			Ribosomal protein S10p/S20e fa...		Potri.011G092800 [exp]	9.16	0.9820
AT1G35680		RPL21C	chloroplast ribosomal protein ...		Potri.013G112900 [exp]	11.22	0.9776

Compare expression of checked genes

Potri.013G085300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.