Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02750 577 / 0 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 478 / 5e-167 Protein phosphatase 2C family protein (.1) AT1G16220 441 / 9e-152 Protein phosphatase 2C family protein (.1) AT1G79630 432 / 1e-147 Protein phosphatase 2C family protein (.1.2.3) AT1G03590 393 / 3e-133 Protein phosphatase 2C family protein (.1) AT4G03415 387 / 1e-130 Protein phosphatase 2C family protein (.1.2) AT5G27930 315 / 7e-104 Protein phosphatase 2C family protein (.1.2) AT3G05640 306 / 8e-101 Protein phosphatase 2C family protein (.1.2) AT5G01700 300 / 6e-98 Protein phosphatase 2C family protein (.1.2) AT3G16800 267 / 1e-85 Protein phosphatase 2C family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G054200 [exp] 771 / 0 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.004G066200 [exp] 460 / 7e-159 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G473300 [exp] 459 / 3e-158 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G103100 [exp] 404 / 3e-137 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 401 / 2e-136 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G105000 [exp] 333 / 1e-109 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 331 / 1e-108 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 322 / 1e-106 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G012200 [exp] 315 / 3e-104 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000402 [exp] 476 / 5e-165 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 473 / 9e-164 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10022588 [exp] 430 / 1e-148 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10021486 [exp] 414 / 1e-141 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3) Lus10041277 [exp] 435 / 5e-141 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10037431 [exp] 432 / 7e-139 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10018570 [exp] 394 / 2e-133 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10039802 [exp] 394 / 2e-133 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10033708 [exp] 390 / 4e-132 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031631 [exp] 389 / 2e-131 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.013G085500.1 pacid=42810821 polypeptide=Potri.013G085500.1.p locus=Potri.013G085500 ID=Potri.013G085500.1.v4.1 annot-version=v4.1 ATGGGGTCCTGCTTGTCTGCAGAAAGCAGGAGCCCTCGCCCTGGTACGCCTTCCTCTCCTGCCTTTGGCGTCAGGAAGAGGAAGAAATCTAAAAAGCGTC CGGGGTCTCGGAATTCCTCGTTTGATTTTAGGAGGGAAGAACCACTTCATAGGATTCCAGGAAGGTTGTTCTTAAATGGGTCTAGTGATATCGCTTCATT GTTTACCCAGCAAGGCAAGAAGGGAACTAATCAGGATGCTATGATTGTTTGGGAGAATTTTGGCTCTAGGACAGATGCAGTTTTTTGTGGTGTTTTTGAT GGCCATGGACCTTACGGTCATATGGTTGCTAAAAGAGTGAGGGATTCTCTCCCCCTGAAACTGACTGCTTATTGGGAAATGAATGCAACCAGTGAAGCTG TTCTCAAGGAGATCAGCCTTAATACCACAGGGAGCATGAACTCTGAAGACACTTCCTTTATATCTGCTGATGAAGAACCTAGAGCCTCTGTTGATCTCGA GGATGCCGAGAAGCACCCGGAAAATTTTCAGACTCTGAAAGAGTCATTTCTGAAGGCGTTCAAAGTCATGGACAGGGAACTGAGGGTGCATGCTAATATT GATTGCTTTTGCAGTGGGACAACAGCAGTTACTTTAGTCAAGCAGGGTCAATATCTTGTCCTAGGAAATGTTGGGGACTCAAGAGCTGTACTTGGTACAA GGGACAAGGATGATTCTCTTGTTGCTGTTCAGTTGACTGTGGATCTCAAACCAAATCTTCCAGCGGAAGCAGAAAGAATTAGAAAGTGTAAAGGGCGGGT TTTTGCTCTTCAGGATGAACCTGAGGTAGCTAGAGTCTGGCTACCGAATAATGACTCCCCTGGCCTGGCCATGGCACGGGCTTTTGGAGATTTTTGCCTA AAGGATTTTGGTCTCATCTCTGTGCCTGATATATCTTATTGGCACTTAACTGAGAAGGATGAATTTATAGTGTTGGCAACAGATGGGATTTGGGATGTGC TCTCGAATAAAGAGGTGGTGGACATTGTTGCATCAGTGTCGTCACGTTCCTCTGCTGCGAGAGCCTTGGTCGAGTCAGCAGTTCGAGCCTGGAGGTACAA GTATCCAACCTCCAAGATTGATGACTGCGCTGTAGTTTGCCTCTTCCTCGAATCGAATGATTTATCTACTGCTTCCAATATCAAGGCGAATGAACAGCTT GCTTCAGTGGACCAAGCTGACAATGGCAGGCAGAAAGAGGATGATCTCCCCAGTCTAACCTGTCTGGACCACGCAGGAGGAAATGCAGAGGAAGATTCCA CAAAACAAGATGAATTGCAATTAGAATGTGGAATAGAGTGGTCTGCTCTCGAAGGAGTCTCTCGTGTTAACACCATGTTGAATCTACCAAGGTTTGTGCC AGGAAAAGAGGGGAAGAAGGCCGCAGGAGAGGCAAAGACTCGGAAATGA
AA sequence Show only first row Show all	>Potri.013G085500.1 pacid=42810821 polypeptide=Potri.013G085500.1.p locus=Potri.013G085500 ID=Potri.013G085500.1.v4.1 annot-version=v4.1 MGSCLSAESRSPRPGTPSSPAFGVRKRKKSKKRPGSRNSSFDFRREEPLHRIPGRLFLNGSSDIASLFTQQGKKGTNQDAMIVWENFGSRTDAVFCGVFD GHGPYGHMVAKRVRDSLPLKLTAYWEMNATSEAVLKEISLNTTGSMNSEDTSFISADEEPRASVDLEDAEKHPENFQTLKESFLKAFKVMDRELRVHANI DCFCSGTTAVTLVKQGQYLVLGNVGDSRAVLGTRDKDDSLVAVQLTVDLKPNLPAEAERIRKCKGRVFALQDEPEVARVWLPNNDSPGLAMARAFGDFCL KDFGLISVPDISYWHLTEKDEFIVLATDGIWDVLSNKEVVDIVASVSSRSSAARALVESAVRAWRYKYPTSKIDDCAVVCLFLESNDLSTASNIKANEQL ASVDQADNGRQKEDDLPSLTCLDHAGGNAEEDSTKQDELQLECGIEWSALEGVSRVNTMLNLPRFVPGKEGKKAAGEAKTRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02750			Protein phosphatase 2C family ...		Potri.013G085500 [exp]	0	1
AT2G23310		ATRER1C1, ATRER...	Rer1 family protein (.1.2)		Potri.005G141700 [exp]	8.88	0.7767
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Potri.004G120800 [exp]	39.94	0.7528
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Potri.008G043600 [exp]	44.23	0.7383	RCY1.2
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Potri.019G000900 [exp]	45.21	0.6903
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	47.27	0.6901
AT3G09300		ORP3B	OSBP(oxysterol binding protein...		Potri.006G086400 [exp]	72.36	0.7112
					Potri.013G070900 [exp]	87.46	0.6895
AT1G19860	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G025100 [exp]	87.97	0.7236
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.008G004600 [exp]	96.56	0.7269
AT1G33970			P-loop containing nucleoside t...		Potri.013G104800 [exp]	100.87	0.7258

Compare expression of checked genes

Potri.013G085500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.