Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16450 283 / 4e-99 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) AT3G02770 282 / 5e-99 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) AT5G56260 243 / 2e-83 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G053800 [exp] 318 / 3e-113 AT5G16450 292 / 5e-103 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Potri.011G169700 [exp] 247 / 5e-85 AT5G56260 265 / 3e-92 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026835 [exp] 313 / 3e-111 AT5G16450 299 / 1e-105 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Lus10020212 [exp] 313 / 3e-111 AT5G16450 299 / 1e-105 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1.2) Lus10032885 [exp] 253 / 2e-87 AT5G56260 279 / 9e-98 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) Lus10027126 [exp] 252 / 4e-87 AT5G56260 278 / 2e-97 Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (.1) Lus10020211 [exp] 232 / 2e-79 ND 225 / 8e-77
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF03737 [poplar] [flax] RraA-like Aldolase/RraA
Representative CDS sequence Show only first row Show all	>Potri.013G085700.3 pacid=42812576 polypeptide=Potri.013G085700.3.p locus=Potri.013G085700 ID=Potri.013G085700.3.v4.1 annot-version=v4.1 ATGGCGTTGGTTACAACTGCTGAAGTTTGTGACACAAATCCACAGCAAATTGTCAGTGGTGAGCTTCGAGCACTCCAGCCAATCTTTCAGATTTATGGTC GGCGCCAAGTCTTCTCCGGTCCAGTAGTGACTCTTAAGGCATTTGAAGACAATGTTTTAATTCGTGAGTTTCTTGAGGAGAGAGGTAGTGGTAGAGTTCT TGTTGTAGATGGTGGTGGCAGTTTGCGCTGTGCAATACTTGGAGGTAATCCTGTGGTACAAGCTCAGAATAATGGATGGGCTGGTATAGTGGTTAATGGC TGCATACGTGATGTTGACGAGATTAATGGTTGTGATATTGGAGTGAGAGCCCTGGGCTCCCATCCGATGAAAGCCAACAAGAAGGGTATCGGAGAGAAAC ATGTTCCTATTACCATAGGTGGCACCAGAATCAGTGATGGAGAATGGCTTTATGCAGATACTGACGGGATCTTGATTTCTCGAGCAGAGTTATGTGTCTG A
AA sequence Show only first row Show all	>Potri.013G085700.3 pacid=42812576 polypeptide=Potri.013G085700.3.p locus=Potri.013G085700 ID=Potri.013G085700.3.v4.1 annot-version=v4.1 MALVTTAEVCDTNPQQIVSGELRALQPIFQIYGRRQVFSGPVVTLKAFEDNVLIREFLEERGSGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNG CIRDVDEINGCDIGVRALGSHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16450			Ribonuclease E inhibitor RraA/...		Potri.013G085700 [exp]	0	1
AT3G12760			unknown protein		Potri.008G083800 [exp]	3.46	0.6422
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Potri.011G095600 [exp]	6.16	0.6647	GA2ox6,GA2.8
AT1G03940			HXXXD-type acyl-transferase fa...		Potri.019G118101 [exp]	14.49	0.6388
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Potri.012G055700 [exp]	17.72	0.6562
					Potri.006G037801 [exp]	17.74	0.6528
AT1G32928			unknown protein		Potri.011G151600 [exp]	20.92	0.6334
AT3G61180			RING/U-box superfamily protein...		Potri.014G075000 [exp]	23.32	0.6238
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Potri.014G086300 [exp]	23.55	0.6008
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Potri.006G151600 [exp]	31.74	0.5997	ACO5
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G014400 [exp]	43.68	0.5965

Compare expression of checked genes

Potri.013G085700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.