Plant FIBer expression Database

Potri.013G085850 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16460 269 / 5e-87 Putative adipose-regulatory protein (Seipin) (.1)
AT1G29760 132 / 8e-34 Putative adipose-regulatory protein (Seipin) (.1)
AT2G34380 130 / 2e-33 Putative adipose-regulatory protein (Seipin) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G072200
[exp]
139 / 2e-36 AT1G29760 382 / 4e-127 Putative adipose-regulatory protein (Seipin) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020213
[exp]
324 / 7e-108 AT5G16460 285 / 4e-93 Putative adipose-regulatory protein (Seipin) (.1)
Lus10026836
[exp]
313 / 1e-103 AT5G16460 282 / 3e-92 Putative adipose-regulatory protein (Seipin) (.1)
Lus10007323
[exp]
134 / 2e-35 AT1G29760 355 / 1e-119 Putative adipose-regulatory protein (Seipin) (.1)
Lus10034735
[exp]
124 / 2e-31 AT1G29760 231 / 3e-70 Putative adipose-regulatory protein (Seipin) (.1)
Lus10033273
[exp]
119 / 2e-29 AT1G29760 228 / 5e-69 Putative adipose-regulatory protein (Seipin) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06775 Seipin Putative adipose-regulatory protein (Seipin)
Representative CDS sequence
>Potri.013G085850.1 pacid=42811348 polypeptide=Potri.013G085850.1.p locus=Potri.013G085850 ID=Potri.013G085850.1.v4.1 annot-version=v4.1
ATGAAAAAAGAAGAATACTGCAACCTAATACCCAAAGCCGATTGGTTCACACAAATAATCTATTTCTATTCAGATACAATCTACAACTGTATCATGGCTC
TCTTATCACCTTTCATAGCAATTTTCTCCATAGCGTCAGACTCCTACCACCGTGCCGAGGAGGCTGTAGACGCCGTGGAATCAGTGTTTCTCAAGGCTCC
CTCTAAAGTCATCCATGGTACCACCACGCTGTTGAGAAAGATAGGTTTTGGGATTGTTGGTGCTGTACACGTGTGCATGGTTATGATAGTGGTGATGTTA
CTGGCTGCAATGTTGGGTGTTGGATTAATTCAACTGTGGATAGAGGAGCCTGTGTTTATGCGAGAGAGTTTATTCTTTGATTACACCGATGCGAACCCTA
AGGCGGTGTTTACTTTTGGTGGGTTTGTCGACGATGGGAGCATCAAGAAAGGGCTCATGGGAGTTCCACTTGGGCACACATTCCATGTTTCTGTGGCTCT
CTTGATGCCTGAATCTGATCACAATAGGCAAATTGGGATGTTTCAGTTGACTGCAGAAGTTTTATCAGCTGATGGAAACGTGAAGGCAAAATCTAGCCAG
CCATGCATGTTGCGGTTCAGAAGCCTGCCAATTCGGCTTCTACGAACATTTCTCATGGGTGCACCCTTACTATTAGGAATTTCTGAAGAAACTCAGAAGA
TCTCCATTAAAATGTTACAGCTCAAGGAAAGGCATCCACGAAGCAAAGTGATCAGAGTGACTTTAATACCAAGGGCTGGAACAGTATGCCTCCCACAGTT
ATATGAAGCGGAGATCCTCCTGATTTCTAAGCTGCCATGGACAAAAGAAGTGGTGCGCAACTGGAAATGGACATTTTATGTCTGGGCATCCATATATATT
TACATCACGATGCTCATAATTATTCTAAGTTGCTGCAGACCACTTGTTTTCCCAATTACAGCAGTAGATCCCAGTTACTGCCCCGATAGTGCTGAGACAG
AGTATACTGGAGAATCAAAAGAGGCACGAGCTGAAGGAAGGGATGAAAAGGGAATTTCAGAGGTCTTGAGAAGATGGCAGCAAAGGAGGAGGAAGAGAAA
GGCGATCATTTTGCATGGAGAGATGGTGGACAGTACGGAATGCTCATCGGCAAGCATTACCAGGGAAGACACAAGTATGGCCGTTGATGAACAGGACATT
GTAGATTCAGAATCAGTTTGTTAA
AA sequence
>Potri.013G085850.1 pacid=42811348 polypeptide=Potri.013G085850.1.p locus=Potri.013G085850 ID=Potri.013G085850.1.v4.1 annot-version=v4.1
MKKEEYCNLIPKADWFTQIIYFYSDTIYNCIMALLSPFIAIFSIASDSYHRAEEAVDAVESVFLKAPSKVIHGTTTLLRKIGFGIVGAVHVCMVMIVVML
LAAMLGVGLIQLWIEEPVFMRESLFFDYTDANPKAVFTFGGFVDDGSIKKGLMGVPLGHTFHVSVALLMPESDHNRQIGMFQLTAEVLSADGNVKAKSSQ
PCMLRFRSLPIRLLRTFLMGAPLLLGISEETQKISIKMLQLKERHPRSKVIRVTLIPRAGTVCLPQLYEAEILLISKLPWTKEVVRNWKWTFYVWASIYI
YITMLIIILSCCRPLVFPITAVDPSYCPDSAETEYTGESKEARAEGRDEKGISEVLRRWQQRRRKRKAIILHGEMVDSTECSSASITREDTSMAVDEQDI
VDSESVC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G16460 Putative adipose-regulatory pr... Potri.013G085850
[exp]
0 1
AT4G16265 NRPE9B, NRPD9B,... RNA polymerases M/15 Kd subuni... Potri.010G142500
[exp]
11.22 0.9817
AT1G03910 unknown protein Potri.001G242900
[exp]
12.96 0.9816
AT1G74875 unknown protein Potri.013G008800
[exp]
15.74 0.9812
AT5G42340 PUB15 Plant U-Box 15 (.1) Potri.002G009900
[exp]
16.43 0.9800
AT1G19940 ATGH9B5 glycosyl hydrolase 9B5 (.1) Potri.005G115400
[exp]
17.88 0.8830
Potri.016G138166
[exp]
21.16 0.9786
AT1G52520 FAR1_related FRS6 FAR1-related sequence 6 (.1) Potri.003G031500
[exp]
22.53 0.8093
AT4G26270 PFK3 phosphofructokinase 3 (.1) Potri.018G069200
[exp]
22.58 0.9482
Potri.010G112401
[exp]
23.36 0.8645
AT1G01490 Heavy metal transport/detoxifi... Potri.001G099500
[exp]
23.87 0.8614

Potri.013G085850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.