Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56270 299 / 2e-91 WRKY ATWRKY2, WRKY2, WRKY23 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) AT4G26640 276 / 4e-84 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT4G26440 247 / 6e-73 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G03340 244 / 3e-72 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT2G38470 241 / 2e-71 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT1G13960 237 / 1e-69 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G37260 185 / 2e-52 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G04880 187 / 7e-52 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT4G30935 160 / 2e-42 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1) AT5G07100 147 / 2e-40 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G053900 [exp] 621 / 0 AT5G56270 154 / 5e-40 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.011G169300 [exp] 375 / 8e-120 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.001G472800 [exp] 369 / 2e-117 AT5G56270 585 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.011G087900 [exp] 287 / 3e-88 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.001G361600 [exp] 283 / 1e-86 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.013G153400 [exp] 276 / 2e-83 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.016G128300 [exp] 259 / 3e-77 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.004G120800 [exp] 257 / 6e-77 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.010G163000 [exp] 254 / 2e-76 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026838 [exp] 541 / 0 AT5G56270 298 / 7e-91 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10020215 [exp] 447 / 8e-150 AT5G56270 276 / 3e-84 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10032887 [exp] 339 / 4e-106 AT5G56270 540 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10027139 [exp] 333 / 1e-103 AT5G56270 528 / 1e-179 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Lus10003769 [exp] 291 / 5e-89 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10016595 [exp] 276 / 5e-84 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10015377 [exp] 246 / 6e-73 AT2G03340 417 / 3e-141 WRKY DNA-binding protein 3 (.1) Lus10037131 [exp] 241 / 4e-72 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10026634 [exp] 241 / 5e-72 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10030424 [exp] 239 / 3e-71 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G086000.1 pacid=42811987 polypeptide=Potri.013G086000.1.p locus=Potri.013G086000 ID=Potri.013G086000.1.v4.1 annot-version=v4.1 ATGGACAACAACCCAGCAGCGGAGTACAAAACCCTACTGTGGGTTCCCAATCTTGAAACCAAAAGCAGCAACGGTGGTGTTGGTGGTGATAATAACAGAG GGATTAGTATTGCAGAGAGAAGAGCAGCGAAGTGCGGGTTCAAAATGAAAGCGGAGAGGATCAATACAGCCCGCTTTCGAACCACCAGCCCCTTGACATC TCCGCTTCGCTCTCCCTTTATAACCATTCCTTCTGGCATCAGCCCCACTGCCTTGCTTGATTCGCCCATTATGCTATCCAATTCTCATGTTCAGCCGTCT CCGACCACTGGAACTTTTCCATTATCCCCTCTCAAATATGAAAGTGAAAGTTTGTTGCGCTGTGGTGATGGGGAGAGGGGGAGTAATGCAGGTGGTCTCT CCTTCAGGTTCAGATTCAAGCATCTTGGGAATTCTCTTCCACTCTCAGAAAATCAGGGTAATGATTTTGACTTTGAAGCTACTCTCTTGATGGACCCATC AATGGATTTTCAGCTTCCAGTGGAATTTTCAAAGCAAGTTACTCCAGATAAATGCACAAGTGATTCACATACTGATGTCAATGTCTTAGATAGCGTGATT GGAAATGCCAACATTAGTGACATGCAAATTTGCTCTTCTGATTTGGCTAGTAATCCCATTTATGTACAAAGAGAAACTATCCATGGAGAAAATGTTGCGT CATGTCGCCTTATGGAAGAAATTAAACGAACATTACCTGCAACAACAATTGGAAGGTCTTCAGAAGATGGATACAATTGGAGAAAGTATGGGCAGAAACA GGTTAAAGGTAGTGAATATCCTAGAAGCTATTATAAGTGTAACCATGCAAATTGTCTGGTAAAGAAAAAAATAGAGTGTGCCCATGAGGGCCAAATAACA GAAATCATTTACAAAGGTTCACATAATCACCCTAAACCTCAGCCAAGTTGTGGAGCACCACCTGGACCAGCTTCTTCATTAGATGGAACGCCAGAGATGG ATCAAGGCGAATCAGTTCAGAAAAACACAAAGTCAGGGTTCAAGGATATTAAAGTTCAGTCTGATTGGAGGACTGATGGCCCGCAAAGGACGTCCTCAAC CTCTGCTGTGACTGAGCTCTCATCAACCACTCAAATAAAATCTTTAGAAACATATGAATCAACAAAAACTCCGGAACTTTCCTCCACACTTGCAAGTCAT GATGATGATGGGGTTACTCAGGGAAGCTCGTTTGGTGCTGATGCTGATGATGAGTCTGAGTCAAAAAGAAGGAAGATAGAGAGCTGCTTGGTTGAAACAA ATATGGCATCCAGGGCTGCTATCCGTGAGCCAAGAGTTGTTGTTCAAATTGAGAGTGAAGTGGACATACTAGATGATGGTTACCGCTGGAGGAAGTATGG GCAAAAAGTTGTCAAGGGGAATCCAAACCCTAGGAGCTACTATAAATGCACAAGTGCTGGATGTTCAGTTAGGAAGCATGTGGAGAGAGCCTCCCACGAT CTGAAATATGTAATTATAACTTACGAAGGGAAACACAATCATGAAGTGCCTGCAGCCAGAAACAGCAGTCACGGAAACTCAACTGGTAGCAATTTTTCCC AGACTACTGGCAATGCACAGCTTGCCCTGGCATTGGCCAGAAACACCAATGCGCCAAACCCTGAAGCACAAATTCAAGAGTTTGCACCCAGTTTTGATAG AAAACCAGTATTTAACAATGACTATTTGAGATCCAATTTGCCTGGAAATTTCAGTAATGAAATGAATCTTGGGTCTTCCTTTGTTTACCCCATGAGGTTT CCTCCCATCCAAAACGCCATGCCTTATGATTCTTTTGGGGTCAGCAACAACCAGCTTGCTGCCAGTCACTCTGGATCTGTTGCCTCGCTTGTTCCAGATT TTCCAAGATCATTGTCGCCATGTCTTCAAACAGCTGCAAATCTTTCTCTGGCTAGAGTTGATTTTAGTTGTGATGGGAAACCAGTTGGTCAAGTTCAGAC TTTCCTCCAGGGACAGCAGTCGATCAGGCCTAAACAAGAGCAAAAGGATGATAACATTTATGGTGCTAGCTCGTCCATCATGGATAATCTAAATGCACCA TCTTCATCATTGTCAGTATATCATCAGCTCCTGGGAAACTTTCAATCTTAA
AA sequence Show only first row Show all	>Potri.013G086000.1 pacid=42811987 polypeptide=Potri.013G086000.1.p locus=Potri.013G086000 ID=Potri.013G086000.1.v4.1 annot-version=v4.1 MDNNPAAEYKTLLWVPNLETKSSNGGVGGDNNRGISIAERRAAKCGFKMKAERINTARFRTTSPLTSPLRSPFITIPSGISPTALLDSPIMLSNSHVQPS PTTGTFPLSPLKYESESLLRCGDGERGSNAGGLSFRFRFKHLGNSLPLSENQGNDFDFEATLLMDPSMDFQLPVEFSKQVTPDKCTSDSHTDVNVLDSVI GNANISDMQICSSDLASNPIYVQRETIHGENVASCRLMEEIKRTLPATTIGRSSEDGYNWRKYGQKQVKGSEYPRSYYKCNHANCLVKKKIECAHEGQIT EIIYKGSHNHPKPQPSCGAPPGPASSLDGTPEMDQGESVQKNTKSGFKDIKVQSDWRTDGPQRTSSTSAVTELSSTTQIKSLETYESTKTPELSSTLASH DDDGVTQGSSFGADADDESESKRRKIESCLVETNMASRAAIREPRVVVQIESEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASHD LKYVIITYEGKHNHEVPAARNSSHGNSTGSNFSQTTGNAQLALALARNTNAPNPEAQIQEFAPSFDRKPVFNNDYLRSNLPGNFSNEMNLGSSFVYPMRF PPIQNAMPYDSFGVSNNQLAASHSGSVASLVPDFPRSLSPCLQTAANLSLARVDFSCDGKPVGQVQTFLQGQQSIRPKQEQKDDNIYGASSSIMDNLNAP SSSLSVYHQLLGNFQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.013G086000 [exp]	0	1
AT4G15030			unknown protein		Potri.001G266200 [exp]	9.48	0.8261
AT3G61360			Tetratricopeptide repeat (TPR)...		Potri.001G130400 [exp]	10.00	0.8177
AT5G59200		OTP80	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.002G239600 [exp]	12.88	0.8597
AT1G73710			Pentatricopeptide repeat (PPR)...		Potri.013G144800 [exp]	18.65	0.8472
AT5G47360			Tetratricopeptide repeat (TPR)...		Potri.001G154901 [exp]	22.80	0.8423
AT4G24320			Ubiquitin carboxyl-terminal hy...		Potri.004G223200 [exp]	28.00	0.8288
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	32.40	0.8335
AT4G22860			Cell cycle regulated microtubu...		Potri.001G114400 [exp]	44.58	0.8092
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Potri.010G173400 [exp]	46.07	0.8241
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.017G033000 [exp]	47.89	0.8071

Compare expression of checked genes

Potri.013G086000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.