Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00340 300 / 1e-89 RLK4 receptor-like protein kinase 4 (.1) AT1G34300 294 / 3e-87 lectin protein kinase family protein (.1) AT5G35370 293 / 2e-86 S-locus lectin protein kinase family protein (.1) AT1G11340 238 / 2e-66 S-locus lectin protein kinase family protein (.1) AT5G24080 224 / 7e-65 Protein kinase superfamily protein (.1) AT2G19130 231 / 2e-64 S-locus lectin protein kinase family protein (.1) AT4G32300 222 / 2e-61 SD2-5 S-domain-2 5 (.1) AT1G11410 218 / 8e-60 S-locus lectin protein kinase family protein (.1) AT1G61380 213 / 3e-58 SD1-29 S-domain-1 29 (.1) AT1G61440 212 / 4e-58 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G095800 [exp] 1026 / 0 AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) Potri.013G096400 [exp] 1019 / 0 AT2G19130 347 / 2e-107 S-locus lectin protein kinase family protein (.1) Potri.013G096000 [exp] 880 / 0 AT2G19130 300 / 1e-90 S-locus lectin protein kinase family protein (.1) Potri.016G102500 [exp] 654 / 0 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1) Potri.016G102700 [exp] 650 / 0 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.016G102600 [exp] 650 / 0 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.016G102900 [exp] 644 / 0 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 643 / 0 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.013G096300 [exp] 502 / 1e-172 AT1G34300 262 / 2e-80 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004283 [exp] 768 / 0 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 618 / 0 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10024348 [exp] 617 / 0 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 602 / 0 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 320 / 4e-97 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10006052 [exp] 304 / 1e-90 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10029802 [exp] 298 / 7e-89 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031230 [exp] 287 / 1e-84 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 286 / 2e-84 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10039315 [exp] 280 / 2e-81 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.013G086100.1 pacid=42810754 polypeptide=Potri.013G086100.1.p locus=Potri.013G086100 ID=Potri.013G086100.1.v4.1 annot-version=v4.1 ATGGCTATACCATTTTTCTTTCTTTATCTTCTTCTTCTTCTTCTTCTGCTTTCAGTTTTATCCTCTCCGTTCTCCTCTGCAGCACCATCTGATACTTTAA GCGAAGGCTCATCATTGTCAATAGAGAACACAAACGATGTCTTGATATCACAAAGTGGCATTTTCTCTGCTGGATTCTTCCCTGTTGGCGACAATGCATA CTGCTTCACAATATGGTTCACCGAACCTTTTTGTGATAACAACTGCAGCGTGATTTGGATGGCAAACCGCGACCAACCAGTTAATGGAAAAAAATCGAAG CTCTCCCTACTTCATTCGGGTAATCTTCTCCTAATCGATGCTGGTCGCTCCATAGTTTGGGCTACAAACACTGCCTCGCAATTCTCCATTAAGTTGCGTC TCCATGACAACGGTAATCTCTTCTTGTATGAAAAAGAAGGTGGTAGAGTGCTATGGCAAAGCTTTGATTATCCAACTGATACCCTCCTTCCACAACAACC ACTCACTAAAGACAGGCAGCTTGTCTCCTCGAGAAGTCGAAGCAACTATTCTTCAGGATTTTATAAGTTATATTTCGACAGCGATAACGTTCTCCGTCTT CGTTATGATAGCCCGGAGACTTCAAGCATTTACTGGCCGAACACATGGCTTTTGACGTGGGATGGTGGGAGGTCCACTTTTAACAGCTCTAGAATTGCCT TTTTTGATTCTTTGGGAAATTTCACTTCATCTGATGATTTTACTTTCACGTCACCGGATTATGGAATGAGAGTTCAGAGAATATTAAAGATTGATTGTGA TGGTAATCTTCGACTATATAGTCGCGAAAATGTCAGAAACAAATGGATTGTTTCATGGCAAGCCATGTCCCAACCTTGCAGGATTCATGGGATTTGTGGA CCTAACAGTATGTGTAACTATGTCCCTAGTTCTGGCAGAAGATGTTCTTGTCTTCCAGGATTCAAGGCCAAGGATTATTCTGACTGGTCTTTGGGTTGTG AACCTGAATTGAATCGTTCTTGTAGCAGAGATGAGATCAGTTACCTTAAACTATCTAATGTTGAGTTTTTTGGCTATGAATATGGATTCTTTCCTAATTA CACATTGCAGATGTGTGAGGATCTATGCTCAAAAATGTGCAATTGCAAGGGGTTCCAGCTCAGGTTTAGCAGGCGCTACTATCCAAGTAATATTCCTTAT TGTTACCCCAAGAAAGCACTCCTAAATGGCCAATATTCACCACACTTTGATGGAGACATCTACTTGAAAGTACCAAAAACATCCGGTTTTTCTTCTTCCT ATAAGCATGTTGAAGATTCCGTGTTAGATTGTTCTGTTAAAAATGTCGTGCAACTGAACAGAACCTATTCAAAAAGCCATCAAAATGGAACTTTAAAATC TGTTATGTGGTTTGCTTTTGGGGTTGGAGTGGTTGAGTTCTTTAGCATTGTCTTGGTGTGGTATTTCTTGATAAGAAACCAAAACAACTTAGGAGCAGCT AACCAAGGTTATTTTTGTGTTGAGTCCTGCTTCAGAAAATTCACCCTCTCTGAGATAAAAAGAGCAACCAAGGGTTTCACAGAAGAGATTGGTAGAGGTG GAGGAGGAATAGTATACAAAGGAATACTATCTGATGATAGAGTTGCAGCAATAAAGCTACTGCACGAAGCATACCAAGGGGAAGAAGAATTTCGAGCAGA AGTCAGCACATTTGGGAAGCTTAATCACATGAACTTGATAGAAATGTGGGGATATTGCGCTGAGGGAAAGCACAGGCTTTTGGTTTACAAGTACATGGAG CATGGATCTTTGGCAGAAAATCTGCTTTCGAGTACACTTGATTGGGAAAAGAGGTTTGACATTGCCGTCGGAACTGCGAAAGGACTTGCTTATTTGCACG AAGAATGTCTAGAGTGGGTTCTACACTGTGACGTGAAGCCTCAAAACATTCTCCTAGACTCCGATTATCAGCCAAAGGTGTCTGATTTTGGGCTATCTCG ACCGCTAAAAAGAGGTAATTGTAAAGTCAGTTCAAGATTCTCACGGATAAGAGGAACTAGAGGTTACATGGCTCCAGAGTGGGTTTTCAACCTGCCCATC ACCTCCAAAGTTGATGTTTATAGCTATGGGATAGTGTTGCTGGAGATTGTGACAGGAAAGGGTCCAACAGTAGAGATGGAGCACCAAAGGCTAGTGATAC AGGTGAGAGAAAAGATGAAGAAGGAAGCTGTGGATTCTGTGATAGAAATGATAATCGACCCCAAGTTAGAAGGAAAATATGATCGAGCTAAGATGGAAAT TCTGGTTATGGTGGCTTTAAATTGTGTAAATGAAGACAGGGAGGCAAGACCGAGCATGAAACAAGTAGTGGAAATGCTTCTGCACCAAGAATCACCATGA
AA sequence Show only first row Show all	>Potri.013G086100.1 pacid=42810754 polypeptide=Potri.013G086100.1.p locus=Potri.013G086100 ID=Potri.013G086100.1.v4.1 annot-version=v4.1 MAIPFFFLYLLLLLLLLSVLSSPFSSAAPSDTLSEGSSLSIENTNDVLISQSGIFSAGFFPVGDNAYCFTIWFTEPFCDNNCSVIWMANRDQPVNGKKSK LSLLHSGNLLLIDAGRSIVWATNTASQFSIKLRLHDNGNLFLYEKEGGRVLWQSFDYPTDTLLPQQPLTKDRQLVSSRSRSNYSSGFYKLYFDSDNVLRL RYDSPETSSIYWPNTWLLTWDGGRSTFNSSRIAFFDSLGNFTSSDDFTFTSPDYGMRVQRILKIDCDGNLRLYSRENVRNKWIVSWQAMSQPCRIHGICG PNSMCNYVPSSGRRCSCLPGFKAKDYSDWSLGCEPELNRSCSRDEISYLKLSNVEFFGYEYGFFPNYTLQMCEDLCSKMCNCKGFQLRFSRRYYPSNIPY CYPKKALLNGQYSPHFDGDIYLKVPKTSGFSSSYKHVEDSVLDCSVKNVVQLNRTYSKSHQNGTLKSVMWFAFGVGVVEFFSIVLVWYFLIRNQNNLGAA NQGYFCVESCFRKFTLSEIKRATKGFTEEIGRGGGGIVYKGILSDDRVAAIKLLHEAYQGEEEFRAEVSTFGKLNHMNLIEMWGYCAEGKHRLLVYKYME HGSLAENLLSSTLDWEKRFDIAVGTAKGLAYLHEECLEWVLHCDVKPQNILLDSDYQPKVSDFGLSRPLKRGNCKVSSRFSRIRGTRGYMAPEWVFNLPI TSKVDVYSYGIVLLEIVTGKGPTVEMEHQRLVIQVREKMKKEAVDSVIEMIIDPKLEGKYDRAKMEILVMVALNCVNEDREARPSMKQVVEMLLHQESP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00340		RLK4	receptor-like protein kinase 4...		Potri.013G086100 [exp]	0	1
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.003G106900 [exp]	7.28	0.9300	2OGox20
AT1G07630		PLL5	pol-like 5 (.1)		Potri.006G085000 [exp]	9.16	0.8790
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.010G179500 [exp]	17.54	0.9114
					Potri.001G130800 [exp]	23.36	0.9111
AT5G37970			S-adenosyl-L-methionine-depend...		Potri.017G122000 [exp]	30.00	0.9059
AT5G05340			Peroxidase superfamily protein...		Potri.016G132800 [exp]	30.26	0.9070	Pt-PRX1.7
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	31.08	0.9041
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Potri.003G157100 [exp]	32.93	0.8339
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.001G305400 [exp]	36.85	0.9009	1
AT5G37990			S-adenosyl-L-methionine-depend...		Potri.017G121800 [exp]	41.76	0.9005

Compare expression of checked genes

Potri.013G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.