Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02830 541 / 0 C3HZnF ZFN1 zinc finger protein 1 (.1) AT5G16540 449 / 4e-157 C3HZnF ZFN3 zinc finger nuclease 3 (.1.2.3) AT2G47850 363 / 5e-122 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) AT5G18550 316 / 9e-104 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G06410 301 / 5e-98 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT1G04990 266 / 5e-85 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G48440 257 / 5e-81 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G32930 234 / 5e-72 C3HZnF ZFN2 zinc finger nuclease 2 (.1.2) AT5G63260 226 / 3e-69 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) AT3G12680 197 / 3e-57 C3HZnF HUA1 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G053200 [exp] 831 / 0 AT3G02830 527 / 0.0 zinc finger protein 1 (.1) Potri.010G022500 [exp] 361 / 2e-121 AT5G18550 422 / 7e-145 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.008G215700 [exp] 350 / 1e-116 AT5G18550 397 / 8e-135 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.014G159500 [exp] 319 / 4e-105 AT1G04990 312 / 6e-103 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.002G223700 [exp] 318 / 8e-105 AT1G04990 340 / 8e-114 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.015G089100 [exp] 228 / 2e-69 AT5G63260 373 / 9e-126 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.012G092500 [exp] 227 / 3e-69 AT5G63260 362 / 2e-121 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Potri.010G176300 [exp] 206 / 2e-60 AT3G12680 578 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1) Potri.008G080300 [exp] 202 / 2e-59 AT3G12680 544 / 0.0 ENHANCER OF AG-4 1, floral homeotic protein (HUA1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020196 [exp] 719 / 0 AT3G02830 510 / 0.0 zinc finger protein 1 (.1) Lus10026996 [exp] 717 / 0 AT3G02830 508 / 3e-180 zinc finger protein 1 (.1) Lus10033962 [exp] 338 / 8e-112 AT5G18550 456 / 7e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10002880 [exp] 330 / 2e-108 AT5G18550 457 / 3e-158 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10013476 [exp] 321 / 8e-106 AT2G47850 532 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035248 [exp] 319 / 3e-105 AT2G47850 490 / 8e-172 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10007941 [exp] 318 / 2e-104 AT2G47850 524 / 0.0 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10034620 [exp] 314 / 6e-104 AT2G47850 479 / 2e-168 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2.3) Lus10035330 [exp] 287 / 2e-92 AT1G04990 335 / 1e-111 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2) Lus10029988 [exp] 279 / 1e-88 AT1G04990 323 / 2e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [poplar] [flax] CCCH_zf PF00642 [poplar] [flax] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Potri.013G086800.1 pacid=42810895 polypeptide=Potri.013G086800.1.p locus=Potri.013G086800 ID=Potri.013G086800.1.v4.1 annot-version=v4.1 ATGGATTTTGATGCCGGAATTCCGATGTCTCGTAGTGGTGTTGGTCTACCAGCTGTAACCGAGGGAACTTCTATGTCACCGTCTTTAAGCGAAGATGCAA TGTGGCAAATGAACCTGAGATCGAGTGAAACAATGGAAGCTGGGCCATATCCTGAGCGTCCTGGAGAGCCAGATTGTTCATATTATATAAGAACAGGCCT CTGTAGATTTGGGGCTACATGCCGATTTAATCACCCCCCTAATCGGAAGCTGGCAATTGCAGCAGCCAGGATGAAGGGGGAATTTCCAGAAAGAATAGGA CAACCAGAATGCCAGTACTACTTGAAGACAGGAACTTGCAAGTTTGGGGCCACGTGCAAGTTTCATCACCCTAGAGACAAGGCTGGGATTTCTGGAAGAG TGTCTTTAAATATTTTGGGCTATCCACTCCAACCGAATGAGATCGAGTGTGCTTATTACTTAAGAACAGGACAGTGCAAGTTTGGTAGCACTTGTAAATT TCACCATCCTCAGCCAACTAATATGATGGTTCCACTGCGTGGCTCTCCTATTTACCCTACTGTCAGCTCTCCAACTACCCCTGGTCAACAATCCTATCCA GGAGGACTTGCAACAACCTGGTCAAGGGCATCTTTTATTACTAGCCCACGCTGGCAAGCTCCTTCAAGTTATACACCTTTGATTCTACCTCAGGGAGTCG TGTCAGTCCCTGGCTGGAATGCATACAGTGGTCAGCTTGGGTCGGTATCATCTCCAGAGAGTCAGCAACAAACAGGAAACAGTCAGATATATGGAACCTC ACGCCACAGTGAATCAGTTAATGCAGGATCTCAAGGGACATTTTCCCCATACCGTTCTGGCTCTGCCCCCTTGGGATTTTATGCCTTGCAAAGAGAGAGT GTTTTTCCTGAGAGACCTGGTCAGCCTGAATGCCAGTTTTACATGAAGACTGGAGACTGTAAGTTCGGTGCAGTTTGTAGATTCCATCATCCAAGGGAGA GACTAATTCCTGCTCCAGACTGTGTCTTGAGTCCAATTGGGCTGCCTTTACGTCCAGGAGAACCTCTATGCATCTTCTACTCTCGTTACGGTATCTGCAA GTTTGGTCCAAGTTGCAAGTTTGACCACCCCATGGGGGTTTTCACATACAATCTCACAGCATCATCTTCAGCTGATGCCCCAGTTCGACGGCTATTGGGG TCCTCATCAGGATCCCCCGGATTAACTTTGTCATCAGAAGGGCTTGTTGAAGCAGGCCCGACAAAGCCAAGGCGACTTTCACTATCAGAGCCTAGACAAA TGCCCCCGGGTGATGATAATATTGACACGGGCGGGTGA
AA sequence Show only first row Show all	>Potri.013G086800.1 pacid=42810895 polypeptide=Potri.013G086800.1.p locus=Potri.013G086800 ID=Potri.013G086800.1.v4.1 annot-version=v4.1 MDFDAGIPMSRSGVGLPAVTEGTSMSPSLSEDAMWQMNLRSSETMEAGPYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIG QPECQYYLKTGTCKFGATCKFHHPRDKAGISGRVSLNILGYPLQPNEIECAYYLRTGQCKFGSTCKFHHPQPTNMMVPLRGSPIYPTVSSPTTPGQQSYP GGLATTWSRASFITSPRWQAPSSYTPLILPQGVVSVPGWNAYSGQLGSVSSPESQQQTGNSQIYGTSRHSESVNAGSQGTFSPYRSGSAPLGFYALQRES VFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCIFYSRYGICKFGPSCKFDHPMGVFTYNLTASSSADAPVRRLLG SSSGSPGLTLSSEGLVEAGPTKPRRLSLSEPRQMPPGDDNIDTGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Potri.013G086800 [exp]	0	1
AT3G15354		SPA3	SPA1-related 3 (.1)		Potri.001G399600 [exp]	7.81	0.8867	Pt-SPA3.1
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Potri.002G096900 [exp]	13.03	0.8486	CRY1.2
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Potri.007G082500 [exp]	27.92	0.8693
AT3G26085			CAAX amino terminal protease f...		Potri.008G181400 [exp]	30.98	0.8272
AT4G37470			alpha/beta-Hydrolases superfam...		Potri.007G052000 [exp]	34.29	0.8575
AT5G56850			unknown protein		Potri.006G151100 [exp]	43.72	0.8544
AT5G21222			protein kinase family protein ...		Potri.018G081700 [exp]	55.28	0.8365
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.007G116550 [exp]	57.05	0.8284
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Potri.006G062300 [exp]	115.02	0.8157
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Potri.019G053200 [exp]	126.24	0.7849	ZFN3.2

Compare expression of checked genes

Potri.013G086800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.