Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65320 522 / 0 Cystathionine beta-synthase (CBS) family protein (.1) AT5G53750 86 / 4e-18 CBS domain-containing protein (.1) AT4G27460 74 / 3e-14 Cystathionine beta-synthase (CBS) family protein (.1) AT1G15330 50 / 2e-06 AtPV42a Cystathionine beta-synthase (CBS) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G052650 [exp] 660 / 0 AT1G65320 516 / 0.0 Cystathionine beta-synthase (CBS) family protein (.1) Potri.011G122000 [exp] 98 / 4e-22 AT5G53750 355 / 6e-120 CBS domain-containing protein (.1) Potri.001G402900 [exp] 97 / 7e-22 AT5G53750 372 / 7e-127 CBS domain-containing protein (.1) Potri.004G041000 [exp] 91 / 6e-20 AT5G53750 295 / 6e-97 CBS domain-containing protein (.1) Potri.011G050500 [exp] 78 / 2e-15 AT5G53750 261 / 1e-83 CBS domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037535 [exp] 480 / 4e-169 AT1G65320 483 / 2e-170 Cystathionine beta-synthase (CBS) family protein (.1) Lus10011457 [exp] 465 / 2e-163 AT1G65320 485 / 2e-171 Cystathionine beta-synthase (CBS) family protein (.1) Lus10018183 [exp] 89 / 3e-19 AT4G27460 298 / 3e-98 Cystathionine beta-synthase (CBS) family protein (.1) Lus10025651 [exp] 89 / 3e-19 AT4G27460 301 / 2e-99 Cystathionine beta-synthase (CBS) family protein (.1) Lus10042702 [exp] 60 / 1e-09 AT5G53750 278 / 3e-90 CBS domain-containing protein (.1) Lus10029665 [exp] 51 / 9e-07 AT5G53750 283 / 2e-92 CBS domain-containing protein (.1) Lus10030788 [exp] 44 / 0.0003 AT1G69800 491 / 4e-173 Cystathionine beta-synthase (CBS) protein (.1), Cystathionine beta-synthase (CBS) protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.013G087100.1 pacid=42812380 polypeptide=Potri.013G087100.1.p locus=Potri.013G087100 ID=Potri.013G087100.1.v4.1 annot-version=v4.1 ATGGCATCTGTGTTTCTTTATCATGTGGTGGGAGATCTGACGGTGGGGAAGCCAGAGATGGTGGAATTCTACGAGACAGAGACGGTAGAATCTGCGATTC GGGCGATTGGAGAGTCGACAGAGTGTGGGATTCCAGTTTGGAAGAGGAAATCTCATGTGAGCATGATTGAGACCAGTGAAATGAGACAACAAAGGTTTGT TGGTATCCTTAATTCTCTTGATATTGTGGCTTTTTTGGCTTCAACTGAGTGCTTGGAGGACCAGGATAAGGCCATCAAGACTTCGGTCTCACAGGTTGTT GTTCCTAATGCTTCGCTTCTCAAACAGGTTGATCCTGCTACAAGATTGATAGATGCTTTGGAAATGATGAAGCAAGGTGTAAGGCGCCTTCTTGTTCCAA AAAGCATGGTATGGAAAGGTATGAGCAAGCGATTCTCTTTTCTCTACAATGGTAAGTGGCTCAAGAATGCTGATGCATCCAACAACAGCAGCAATAATAA CCTCACCATAAACACCAACCGTCCTTCCTCATCTTCTGGCACTTCCAACCGCAACAAATTTTGCTGTCTCTCTAGAGAAGATGTCATCCGTTTTCTCATT GGATGCCTTGGTGCTCTAGCTCCACTACCTCTTTCATCCATTTCCTCCCTTGGAGTCATTAACCCAAACTACACCTCAGTAGAAGCCTCTCTTCCTGCTT TTGAAGCTACGAGAAAGCTACATGGAGATCCCAGTGAAGTAGCTGTTGTGGAGCCCATTCCAGATGGCCAGTGTAAGATCATAGGGGAAATATCAGCCTC CAGATTGTGGAAATGTGATTACCTGGCTGCAGCATGGGCTTTAGCCAATCTCTCAGCTGGGCAGTTTGTAATGGGGGTTGAGGATAATGAAACAGCAAGA TCGCTCCTGGATTTTGCAGTCAATTCAGCAGTTGGTGATGAGAGTACAGCTAATGGGATTGGTTCTACGAGGCTGAGGGAATTCAGTAGTAGGAGCATTG GGTTCAATCCAGGTAGCTCAATCAGAATGGGCAGGAGCATGTACAGGGGTCGAAGTGCACCCCTGACATGTAAAATTACAAGCTCGTTGGCCGCGGTGAT GGCTCAGATGCTGTCTCACAGGGCAACCCATGTATGGGTGATTGAGGATGATAGTGATGACATTTTAGTTGGGGTGGTTGGTTACGCTGACATCTTAGCT GCAGTAACGAAACAACCTGCATCTGTTACTGTGAATCGACCTGAGGGGGGTTTCACAACTGAATTTCAAAATTGA
AA sequence Show only first row Show all	>Potri.013G087100.1 pacid=42812380 polypeptide=Potri.013G087100.1.p locus=Potri.013G087100 ID=Potri.013G087100.1.v4.1 annot-version=v4.1 MASVFLYHVVGDLTVGKPEMVEFYETETVESAIRAIGESTECGIPVWKRKSHVSMIETSEMRQQRFVGILNSLDIVAFLASTECLEDQDKAIKTSVSQVV VPNASLLKQVDPATRLIDALEMMKQGVRRLLVPKSMVWKGMSKRFSFLYNGKWLKNADASNNSSNNNLTINTNRPSSSSGTSNRNKFCCLSREDVIRFLI GCLGALAPLPLSSISSLGVINPNYTSVEASLPAFEATRKLHGDPSEVAVVEPIPDGQCKIIGEISASRLWKCDYLAAAWALANLSAGQFVMGVEDNETAR SLLDFAVNSAVGDESTANGIGSTRLREFSSRSIGFNPGSSIRMGRSMYRGRSAPLTCKITSSLAAVMAQMLSHRATHVWVIEDDSDDILVGVVGYADILA AVTKQPASVTVNRPEGGFTTEFQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65320			Cystathionine beta-synthase (C...		Potri.013G087100 [exp]	0	1
AT3G51510			unknown protein		Potri.011G146200 [exp]	2.23	0.7967
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Potri.001G014000 [exp]	10.95	0.8075	LIP2.2
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Potri.007G010700 [exp]	19.69	0.7994

Compare expression of checked genes

Potri.013G087100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.