Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CLV2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65380 839 / 0 AtRLP10, CLV2 clavata 2, Receptor Like Protein 10, Leucine-rich repeat (LRR) family protein (.1) AT2G25790 249 / 9e-71 Leucine-rich receptor-like protein kinase family protein (.1) AT4G36180 239 / 1e-66 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 237 / 3e-66 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 236 / 1e-65 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 231 / 8e-64 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G08850 229 / 1e-63 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT3G53240 227 / 3e-63 AtRLP45 receptor like protein 45 (.1) AT2G26330 227 / 6e-63 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 227 / 1e-62 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G237400 [exp] 255 / 5e-73 AT2G25790 885 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.018G045500 [exp] 246 / 2e-69 AT2G25790 925 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G235100 [exp] 246 / 4e-69 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.008G009300 [exp] 243 / 3e-68 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.004G065400 [exp] 241 / 2e-67 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G104600 [exp] 238 / 2e-66 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.001G262800 [exp] 237 / 3e-66 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.011G164800 [exp] 237 / 4e-66 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.019G021700 [exp] 236 / 7e-66 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026993 [exp] 899 / 0 AT1G65380 759 / 0.0 clavata 2, Receptor Like Protein 10, Leucine-rich repeat (LRR) family protein (.1) Lus10020189 [exp] 872 / 0 AT1G65380 760 / 0.0 clavata 2, Receptor Like Protein 10, Leucine-rich repeat (LRR) family protein (.1) Lus10004388 [exp] 241 / 5e-67 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023323 [exp] 239 / 9e-67 AT5G46330 1055 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006045 [exp] 234 / 3e-65 AT2G25790 858 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 233 / 1e-64 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011585 [exp] 231 / 2e-64 AT5G65700 1044 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10027688 [exp] 229 / 1e-63 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10023677 [exp] 229 / 3e-63 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10032954 [exp] 226 / 4e-62 AT5G56040 1399 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.013G087200.1 pacid=42811364 polypeptide=Potri.013G087200.1.p locus=Potri.013G087200 ID=Potri.013G087200.1.v4.1 annot-version=v4.1 ATGTCGAATTTTGTTCACCCTTGTTTGTTGCAATTACTGCCACTCTTGTTCTTTGTACTGGTACTGTTGTTTTGTGCATCATGCCAATCTGCCTCTGTTG ATCTTAACCCAGAAGACAAAGCCTCACTTTTACTGTTCCGGTCTTGGATTCAGGACCCCGTTCATGGCTTGTCAACCTGGTTTGGTTCTAACTGCACTGA CTGGACAGGTCTGGCCTGCCAAAATCACACCGGCCAGGTCATTTCTATCAACTTGAGAAACGTGAATCTGTCTGGTTATATTCACCCCAATTTGTGCAAT CTTTTGTTTCTTGAAACCCTGGTTTTGTCTGAAAATGGTTTTACGGGCCAAATCCCATTGTGCTTTGGTAGGTTGCAAAATCTCAAAACCCTTGATCTTA GTCACAATAGATTTGGTGGTGTTGTGCCTGACTCACTTGTGACGCTTAGACAATTGAAGGAACTTTCTTTAAATGGGAACCATGATTTGGGAGGTGTTGT TCCTTGGTGGGTTGGTAATTTCTCGTCCAATTTGGAAATACTTGACTTGGGTTTCAATTCTTTTCATGGGACAATACCTGAAAGCTTGTTTTACTGCAAG TCATTGAAATATTTGGATCTTGGAAATAATTACCTGTCGGGTGATCTTCATGACTTTTTTCAGCCTCTGGTTTTTCTCAATCTCAGTTCTAATTCGCTTT CAGGTACTTTGCCTTGTTTTTCTGCTTCCATTCGATCTCTCGGTGTTTTGAATTTAGCTAGGAATTCTATTGTGGGTGGTATTCCTACATGCATTGCTTC CCTAGAAGAATTGACGCATCTGAATTTATCATTTAATCACTTGAATTATGCAATATCTCCGAGACTTGTTTTCTCTGAGAAGCTTCTTGCATTGGATTTG AGTTTCAATGATCTATCTGGTCCACTTCCAACCAAGATTGCAGAGACAACAGAGAAATCAGGCCTTGTTCTTCTTGACTTGTCCCACAATTGTTTCTCTG GTGGTATCCCTTTGAAGATCACCGAGCTGAAAAGTCTACAGGCATTGTTTCTTTCTCACAATCTTCTTACTGGGGAAATCCCTGCTAGGATTGGAAATTT GACGTATCTCCAAGTGATAGATCTTTCACGCAACTCATTATCGGGTTCAATTCCTTTAAATATTGTTGGGTGTTTTCAGCTACTTGCACTAGTTCTCAAT AACAACAATCTCTCTGGTCAAATTCAACCTGAACTTGATGCGCTGGATAGCCTGAAAGTATTGGATATAAGCAACAATGGGATTTCTGGGGAGATTCCAC TAACTTTGGCTGGCTGCAAATCACTTGAGATAGTAGATTTCAGCTCCAACAATCTCTCGGGAAATTTGAATGATGCAATAACCAAATGGTCAAACCTCAG GTATCTCTCCTTGGCTCGAAACAAATTCAGTGGAAGTTTACCCAGTTGGCTGTTCACATTTGAAGAGATCCAAATGATGGATTTTTCAGGCAATAAATTC TCTGGCTTCGTACCCGATGGCAACTTCAACATTAGCTTGGAGTTCAATAATGGAGATGTTAGACGATTGCCTGCCGAGCCATTTCTTGCAATTCGAAATA TTGAGATCAAAATATCTGTGTTGGTTGTTGATAACAGTGAATTGAGCTTCAATTACCATCTATCTTCAACTGCTGGAATTGATCTATCTGATAATTTGCT ACACGGGGAGATTCCACATGGCTTATTTGGACTACAAGGTTTGGAGTATTTGAACTTGTCATACAATTTTCTTGATGGTCAGGTTCCCAGTCTAGAGAAG ATGGAACGTTTAAGGGCATTGGACTTGTCACATAACTCTTTATCGGGTCAAATACCAGGAAATATTTCCAGGCTTAAAGAACTCGTACTCTTGAACTTCT CATATAACAGTTTGTCTGGATTTGTTCCCCAGAAAGAGGGGTATGGAAGGTTTCCTGGAGCATTTGCTGGAAATCCAGATTTGTGTGTGGAGTCCCCTAG ACTAAAGTGCGACTCAGGTAGCCTGCCAACTGTGCCTGGGAAGTCATTTGAAGAAACTGAAGGTCCAATTTCTGTTTGGATCTTTTGCATAAGTGCCTTT GTTAGTTTTTATTTTTGTGTTGTCACTCTATTTTGTTCCACTCGAGCAAGAAGTTATCTTCTTCAGACAAAAGTTTAA
AA sequence Show only first row Show all	>Potri.013G087200.1 pacid=42811364 polypeptide=Potri.013G087200.1.p locus=Potri.013G087200 ID=Potri.013G087200.1.v4.1 annot-version=v4.1 MSNFVHPCLLQLLPLLFFVLVLLFCASCQSASVDLNPEDKASLLLFRSWIQDPVHGLSTWFGSNCTDWTGLACQNHTGQVISINLRNVNLSGYIHPNLCN LLFLETLVLSENGFTGQIPLCFGRLQNLKTLDLSHNRFGGVVPDSLVTLRQLKELSLNGNHDLGGVVPWWVGNFSSNLEILDLGFNSFHGTIPESLFYCK SLKYLDLGNNYLSGDLHDFFQPLVFLNLSSNSLSGTLPCFSASIRSLGVLNLARNSIVGGIPTCIASLEELTHLNLSFNHLNYAISPRLVFSEKLLALDL SFNDLSGPLPTKIAETTEKSGLVLLDLSHNCFSGGIPLKITELKSLQALFLSHNLLTGEIPARIGNLTYLQVIDLSRNSLSGSIPLNIVGCFQLLALVLN NNNLSGQIQPELDALDSLKVLDISNNGISGEIPLTLAGCKSLEIVDFSSNNLSGNLNDAITKWSNLRYLSLARNKFSGSLPSWLFTFEEIQMMDFSGNKF SGFVPDGNFNISLEFNNGDVRRLPAEPFLAIRNIEIKISVLVVDNSELSFNYHLSSTAGIDLSDNLLHGEIPHGLFGLQGLEYLNLSYNFLDGQVPSLEK MERLRALDLSHNSLSGQIPGNISRLKELVLLNFSYNSLSGFVPQKEGYGRFPGAFAGNPDLCVESPRLKCDSGSLPTVPGKSFEETEGPISVWIFCISAF VSFYFCVVTLFCSTRARSYLLQTKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Potri.013G087200 [exp]	0	1	CLV2.1
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.001G197900 [exp]	2.64	0.7750
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.003G043700 [exp]	4.89	0.7503
AT3G10200			S-adenosyl-L-methionine-depend...		Potri.006G043600 [exp]	5.29	0.7175
AT2G18110			Translation elongation factor...		Potri.009G018600 [exp]	8.66	0.7295
AT5G58005			Cytochrome c oxidase, subunit ...		Potri.006G186500 [exp]	11.48	0.6723
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Potri.002G183400 [exp]	12.04	0.7100	Pt-PPI1.3
AT4G25780			CAP (Cysteine-rich secretory p...		Potri.018G096028 [exp]	16.61	0.6411
AT4G19400			Profilin family protein (.1)		Potri.003G106700 [exp]	20.49	0.6754
AT5G58090			O-Glycosyl hydrolases family 1...		Potri.018G150400 [exp]	26.60	0.6718
AT2G34520		RPS14	mitochondrial ribosomal protei...		Potri.001G424950 [exp]	35.35	0.6393

Compare expression of checked genes

Potri.013G087200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.