Plant FIBer expression Database

Potri.013G087400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16520 719 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000439
[exp]
674 / 0 AT5G16520 647 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.013G087400.1 pacid=42812338 polypeptide=Potri.013G087400.1.p locus=Potri.013G087400 ID=Potri.013G087400.1.v4.1 annot-version=v4.1
ATGACGACGACGAGTATTAAATGTCCGAGCAAGTCAATAATCTACAACACGAGCAGGTGCGCGTGTCCGACGGGGCAGTTTCTGAACATCACAACAAACA
GCTGCTCGTATTTCTGGGGACGGTCTGCCATATACACGGACACGGGTGTGGAGGTGGACAACAGCTTCGGCTTTTCGTTTCCAGAAACCATTTTCTCATT
TGATTCAATCAAGAAATTCACTCAGTCTCAGGCTGTTTTCTTGGAGGCGACGCTTGTGATGGTTGCTTCTTGGCTTTTGTTTTGCTTCTTCTTGAGGTTT
ACTAAGCTTGAACATCATGGAACCCACAACATATGGTTCCGTATTAGGTGGTGGATTAGTCGCTTGGACATTTGCTTTGCTACCCGGCATTGGCTGGATG
ATCGAAAGGTGGTTGTAAAGCGGAAAACAGAACTTGGTGGAGCCTTCTCAATAGCAAGTTGGATACTTTTCATCGGGTTGTTTGCTACCCTGCTTTACCA
GATCATATCAAAGAGAACAATTGAGGTGCATAATGTGAGAGCAACAAATGCACCCGATTTGGCCGCCTTCGTTAATGACATGGAATTTAATATAACCACT
GTATCCAGTATGAGCTGTTCAAACTTGCAAGGACTTGGTACCTTAGTTACCGGGAATCCAGGTTTTATTGATCACAGAGTTGCCCCCCTTACTGACTTTG
TGAACTACACATGCCGAAACACAAGTATGGGCCCAACTCTCACTTTTAAGTGTAGCAAGTGCCACTTGAATAGAGATTATATGTATATTTCGTGGCAGTT
TGTTGATCTTCCAAGTACTCCTGCAACGGCTGTTGGTTTTCAGTTCAACCTTAGTGCAAAAGATCATGCTGACAAGAAACATGTGAGTTTTGTTAGCGGC
ACACTAAAGAGTGGAAGCACTTTTGATGATAGACCAGTTACATTCAGGGGAAAGGATTCAAACATACTGAAATTTAATCTGTTTCCTCGAATATACCATA
ACCTACATGATCTAAGGCTTATCCAACCCCTGTTTCATGAGTTTCTTCCGGGTTCGTTCTTTGGGGAGACAAGTCAGCTCCAAGCTTCCCTTGAAACTTC
TAGTGATGGACTAATCAACACTACTCTCTCAATTAGCTACCTATCATCATATATAGTTGAGATCGAAAGCCAAAACATAATGGGCCCTGTAAGCTTCTTA
GCGGATCTTGGTGGCCTATACTGCATAAGTATTGGCATATTTTTCTACTTTTTGGTGCAATGTGAATACAGAGTAAAAAGACTTCGGAATGAAGATGTCA
CTATGCGACAGATAAGAAATCGGTTAAAAGCTCGAGAACACTGGGACAAGTTGAGGAAATATGTAATGTACACATGGGGTTGCAAAACATTGGATAACGA
CTACGAAAGCACTAAACAAGGATCAAGTTGTACTGGCTTCATGATTCCCTCTATTCGTGGAAATGGATCACTGCATGGAAATAAATCATCTAGGAAGAAA
TTGCAAAATAGAGAGGACAGTGTCTCGTTCAACAGGAAAGTCAGCATACCCAGTGAAAAGAATTCCATTGCAGAACATACTTGTACCCAGGGAGTAAAAC
CTTTTATAGCAGAATCTGTGTTGAACTCAGAAGAGAGATTGTTGGATTCCAGGGAAGAGCATCCTCCCAAAGGAGAAGTGCTTATCTCTTCAAATGATAG
GAAACAGCATTCAGTTGGTTTCTATGAGGGAGGTGCTTCTAAGCCTCAAGCATATTCTTGTGAAGATGATGATGTCATCCCCATTCCACCTCCTCTAGAA
TTCAATGCTGGATCTGAAGTAGAGATGTCTGATATCCTGAAGAATCTCCATCGTTTGCATGACTACAATGTTATGCTGAGAGAAAAATTTCTCGCCAACC
AATCTTTACTACACGCTTTAGCATCCAAGTCAACTTCATTAACCAATGGCTGA
AA sequence
>Potri.013G087400.1 pacid=42812338 polypeptide=Potri.013G087400.1.p locus=Potri.013G087400 ID=Potri.013G087400.1.v4.1 annot-version=v4.1
MTTTSIKCPSKSIIYNTSRCACPTGQFLNITTNSCSYFWGRSAIYTDTGVEVDNSFGFSFPETIFSFDSIKKFTQSQAVFLEATLVMVASWLLFCFFLRF
TKLEHHGTHNIWFRIRWWISRLDICFATRHWLDDRKVVVKRKTELGGAFSIASWILFIGLFATLLYQIISKRTIEVHNVRATNAPDLAAFVNDMEFNITT
VSSMSCSNLQGLGTLVTGNPGFIDHRVAPLTDFVNYTCRNTSMGPTLTFKCSKCHLNRDYMYISWQFVDLPSTPATAVGFQFNLSAKDHADKKHVSFVSG
TLKSGSTFDDRPVTFRGKDSNILKFNLFPRIYHNLHDLRLIQPLFHEFLPGSFFGETSQLQASLETSSDGLINTTLSISYLSSYIVEIESQNIMGPVSFL
ADLGGLYCISIGIFFYFLVQCEYRVKRLRNEDVTMRQIRNRLKAREHWDKLRKYVMYTWGCKTLDNDYESTKQGSSCTGFMIPSIRGNGSLHGNKSSRKK
LQNREDSVSFNRKVSIPSEKNSIAEHTCTQGVKPFIAESVLNSEERLLDSREEHPPKGEVLISSNDRKQHSVGFYEGGASKPQAYSCEDDDVIPIPPPLE
FNAGSEVEMSDILKNLHRLHDYNVMLREKFLANQSLLHALASKSTSLTNG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G16520 unknown protein Potri.013G087400
[exp]
0 1
AT1G08710 F-box family protein (.1.2) Potri.013G067600
[exp]
6.70 0.8234
Potri.013G126650
[exp]
8.30 0.8468
Potri.008G125350
[exp]
8.48 0.8327
AT5G06410 DNAJ heat shock N-terminal dom... Potri.006G200900
[exp]
10.95 0.8032
AT5G48970 Mitochondrial substrate carrie... Potri.010G024100
[exp]
11.83 0.8086
AT3G48140 B12D protein (.1) Potri.010G055300
[exp]
12.64 0.7922
AT1G29810 Transcriptional coactivator/pt... Potri.011G078900
[exp]
14.00 0.8002
AT3G17920 Outer arm dynein light chain 1... Potri.012G045300
[exp]
20.44 0.8035
AT5G15270 RNA-binding KH domain-containi... Potri.004G123400
[exp]
21.90 0.7975
AT2G38450 unknown protein Potri.008G075000
[exp]
27.49 0.8131

Potri.013G087400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.