Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44370 413 / 1e-138 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT1G65080 397 / 9e-133 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) AT2G46470 67 / 2e-11 OXA1L inner membrane protein OXA1-like (.1) AT5G62050 66 / 3e-11 ATOXA1, OXA1AT, OXA1 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G121800 [exp] 616 / 0 AT3G44370 415 / 5e-140 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Potri.018G140100 [exp] 69 / 4e-12 AT5G62050 365 / 8e-124 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.006G073000 [exp] 67 / 1e-11 AT5G62050 373 / 1e-126 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Potri.001G091800 [exp] 64 / 1e-10 AT5G62050 451 / 5e-157 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026414 [exp] 476 / 5e-163 AT3G44370 419 / 9e-141 Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain (.1) Lus10001427 [exp] 57 / 2e-08 AT5G62050 387 / 4e-132 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10001639 [exp] 57 / 2e-08 AT5G62050 382 / 3e-130 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1) Lus10023088 [exp] 56 / 6e-08 AT5G62050 412 / 6e-142 HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\) IN ARABIDOPSIS THALIANA, ARABIDOPSIS THALIANA HOMOLOG OF YEAST OXIDASE ASSEMBLY 1 \(OXA1\), homolog of yeast oxidase assembly 1 (OXA1) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0376 [poplar] [flax] Oxa1 PF02096 [poplar] [flax] 60KD_IMP 60Kd inner membrane protein CL0020 [poplar] [flax] TPR PF13181 [poplar] [flax] TPR_8 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.013G087950.1 pacid=42811689 polypeptide=Potri.013G087950.1.p locus=Potri.013G087950 ID=Potri.013G087950.1.v4.1 annot-version=v4.1 ATGACAGCTTCCAATCTTATGCTCTCTGCCCTCCGTCGTTCTCGTCCTCTCTCTACTCTCTCTCGTCTCCTCGCAAACCCTAATCCTAACCCTAACTATA ACTCGCTCGCTTCACAACCAGCAATACCATCTCGCAACTCACTCGCCTCTTTTCATTTCCCCTCCTGTCAATCCTTCTCGACTCGTACAGATGACGACTC CGATTTTTTGGCTTCTGAGTCACCTACCGCGTCAGAACCTATCAATTTTGAACTCGATACTGTAACGGAGGGAGTGGTCAATGGTAGTAATGTTTTTGAA GAGTCGATTTTTCCGGTTGGTGCGTTGCTTGAGTCGTGTCATGATCTCACTGGCCTCCCTTGGTGGATAATCATTGCTTCATCAACATTGGCAATGAGAA TGACGTTGTTTCCTTTACTCGTTTTGCAAATGTACAAGATAAAGCAAATCTCACTGTGTTTTCCTAAATTGCCCCCTCTATTGCCACCACCTCTATCAGG AAGGAGCTATTGGGAACAAATTACAATTTTTAGAAAGGAAAGACGAGCGATTTGCTGCCCCCCATTTTCATGGTTTCTCGCATACCTTTCTGTACAGTTC CCTTGCTTTCTCTTGTGGATGACCAGTATTCGAAGAATGTCTTTGAATAATCATCCTGGGTTTGATTGTGGTGGCACTCTATGGTTTCAAAATTTGACTG AATTTCCTCATGGTGGTTTAGCCTTCATCTTTCCACTCCTTGTTGCAGGCTTGCACTATGTTAATGTTCAGCTCTCCTTTGATAGATCTTCTATTCAAAA CACGGGTGGCCTGTTGGGCTTATTATCAAAATACTACAAGTATTATCTGATATTTTTGACGCTGCCTATGTTTTTCATTGGTTACTGCATTCCACAGGGA AGTCTAGTCTACTGGGTTACCAATAGTTCATTTACTGTAATCCAGCAAGTGTCTCTCAAACATCCTGTTGTGGGTGCTACATTAGGGTTACTCAACAAGG ATTCTCCAAAAACCCCTGCAATTTCTGAAGAAATGGTTACACCAGAATCGGTGTCTTTGGATTCATCAACAAAGTGGCGCAAGGTTTCACCAGAAAATTT ATCACCTGATGAACTACTAGTACTGTCAGTTCAATTGTTATCCAGTGGGCATAGAGACAGAGCTATTTCTATGTTGCAAATGGCACTTAAAAAGGACCCT AACCACATAAAGGCTTTAATTGTAATGGGGCATACTCTACTTCAAGAAGGACTCCATGCAGAGGCTACTGACCATTTGGAGCGTGCCATTTCCAAGCTCT TTCTTGCTGGCCATCCAACAGCTGAAGATGTCAATCATCTGATCCTTACGTTGCAATGGGCAGGTGTTGCCTGTATAAGTCAGGGAAATAAGGCCAGAGG AATTGTGCACTTAGAAAGGGTGGCTAGTCTAGAAGAACCAGAGGACCCTAAAAGCAAAGCCCACTACTTTGATGGTTTGTTATTGCTTGCGAGTGCTCTA AGTAGGGAAGGTCGAAAAGCTGAGGCTGTCAAGTATCTGCGATTAGTTGTTGCTTATGATCCTTCTCGCAAGGATTTCTTGGAAGAGTGTGAAAACGACG AGGACAGTTTTGTTGGCGATCTTGTTAGCAGCAGGAGAGGAGATTACTGA
AA sequence Show only first row Show all	>Potri.013G087950.1 pacid=42811689 polypeptide=Potri.013G087950.1.p locus=Potri.013G087950 ID=Potri.013G087950.1.v4.1 annot-version=v4.1 MTASNLMLSALRRSRPLSTLSRLLANPNPNPNYNSLASQPAIPSRNSLASFHFPSCQSFSTRTDDDSDFLASESPTASEPINFELDTVTEGVVNGSNVFE ESIFPVGALLESCHDLTGLPWWIIIASSTLAMRMTLFPLLVLQMYKIKQISLCFPKLPPLLPPPLSGRSYWEQITIFRKERRAICCPPFSWFLAYLSVQF PCFLLWMTSIRRMSLNNHPGFDCGGTLWFQNLTEFPHGGLAFIFPLLVAGLHYVNVQLSFDRSSIQNTGGLLGLLSKYYKYYLIFLTLPMFFIGYCIPQG SLVYWVTNSSFTVIQQVSLKHPVVGATLGLLNKDSPKTPAISEEMVTPESVSLDSSTKWRKVSPENLSPDELLVLSVQLLSSGHRDRAISMLQMALKKDP NHIKALIVMGHTLLQEGLHAEATDHLERAISKLFLAGHPTAEDVNHLILTLQWAGVACISQGNKARGIVHLERVASLEEPEDPKSKAHYFDGLLLLASAL SREGRKAEAVKYLRLVVAYDPSRKDFLEECENDEDSFVGDLVSSRRGDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44370			Membrane insertion protein, Ox...		Potri.013G087950 [exp]	0	1
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.012G089000 [exp]	10.58	0.7825
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Potri.004G031100 [exp]	34.11	0.7864
AT1G05790			lipase class 3 family protein ...		Potri.002G231567 [exp]	41.67	0.7822
AT2G32970			unknown protein		Potri.014G158200 [exp]	70.85	0.6903
AT2G14255			Ankyrin repeat family protein ...		Potri.001G287000 [exp]	77.04	0.7535
AT1G15780			unknown protein		Potri.003G013300 [exp]	91.21	0.6881
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Potri.012G139000 [exp]	99.72	0.7007	EMS1.2
					Potri.010G252850 [exp]	109.70	0.6950
AT2G35140			DCD (Development and Cell Deat...		Potri.015G122300 [exp]	124.09	0.7319
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.009G018700 [exp]	125.41	0.7308

Compare expression of checked genes

Potri.013G087950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.