Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31800 922 / 0 CYP97A3, LUT5 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) AT3G53130 483 / 4e-165 CYP97C1, LUT1 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) AT4G15110 429 / 1e-143 CYP97B3 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) AT2G44890 149 / 2e-38 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT3G14680 147 / 1e-37 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT1G57750 146 / 1e-37 MAH1, CYP96A15 MID-CHAIN ALKANE HYDROXYLASE 1, "cytochrome P450, family 96, subfamily A, polypeptide 15", cytochrome P450, family 96, subfamily A, polypeptide 15 (.1.2) AT3G14660 146 / 2e-37 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT2G26710 143 / 2e-36 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT2G45510 142 / 6e-36 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT2G23180 141 / 1e-35 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G119800 [exp] 484 / 1e-165 AT3G53130 834 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Potri.006G006200 [exp] 427 / 7e-143 AT4G15110 877 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Potri.018G070900 [exp] 162 / 4e-43 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 158 / 1e-41 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.004G100400 [exp] 156 / 7e-41 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.017G114200 [exp] 155 / 1e-40 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.014G072000 [exp] 152 / 1e-39 AT2G45510 706 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.010G139600 [exp] 146 / 1e-37 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.019G014407 [exp] 146 / 2e-37 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020380 [exp] 954 / 0 AT1G31800 905 / 0.0 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) Lus10023891 [exp] 461 / 9e-156 AT3G53130 852 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Lus10014399 [exp] 456 / 7e-154 AT3G53130 850 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Lus10039040 [exp] 427 / 7e-143 AT4G15110 880 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Lus10009232 [exp] 164 / 3e-42 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10022279 [exp] 152 / 2e-39 AT2G23180 449 / 4e-154 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 151 / 4e-39 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10002527 [exp] 150 / 7e-39 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10038896 [exp] 143 / 3e-36 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10033044 [exp] 142 / 6e-36 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.013G088100.3 pacid=42810835 polypeptide=Potri.013G088100.3.p locus=Potri.013G088100 ID=Potri.013G088100.3.v4.1 annot-version=v4.1 ATGGCTGCCAATATCTCTCTCCTTAACGTCCCATCATCACCATCCATCTGTGTTCATAAGCTTCAAATCCCGCCCATCATCACCTCATCTTCGTTTCCTG CCATACAATATGGAGGGAAATATAAATTTAGTAGCATTCTAGCTTGTGCTTCTTCTTCAAATGGGAGAGAGCCGGAGTCTGTGGACAATGGCGTGAAGAA AGTAGATAAGATTCTTGAGCAGAAACGACGGGCTGAATTGTCTGCCAGGATTGCTTCTGGAGAGTTCACAGTGCAGCAATCTGGTTTTCCATCTGTATTG AGGAATGGCTTGTCAAAATTGGGAATTTCAAATGAGATTCTGGACTTTCTATTCAAATGGGCTGTTGACTTGGACAAAGATTATCCGAAGATTCCAGAGG CGAAAGGGAAAATAAGCGCCATCAGGAGTGAGCCCTTCTTCATACCCTTGTATGAGCTTTACCTCACATATGGTGGTATTTTTAGGCTGACTTTTGGACC CAAGTCCTTTTTGATTGTTTCCGATCCTTCCATTGCCAAACATATACTGAGGGACAATTCAAAGGCTTATTCTAAAGGTATCTTAGCAGAAATTCTAGAA TTTGTCATGGGAAAAGGACTCATCCCAGCAGATGGGGAGCTATGGCGTGTCCGAAGACGTGCTATAGTGCCCTCATTGCATCAGAAGTATGTAGCAGCCA TGATTAGCTTATTTGGAGAAGCAACAGATAGGCTTTGCAAAAAGCTAGATGCAGCTGCTTTTTATGGAGAAGATGTAGAGATGGAGTCCCTCTTCTCCCG TTTAACACTGGATATCATTGGCAGGGCAGTATTTAATTATGACTTTGATTCACTAACAAATGATACTGGAATAGTTGAGGCTGTTTACACAGTTTTGAGA GAAGCAGAGGATCGAAGTGTTGCACCAATTCCAATATGGGAGATCCCAATTTGGAAAGACATTTCACCTAAGCAAAAGAAAGTTGCTGCAGCACTCAAAC TGATCAATGATACACTTGATGATCTGATTGCTATTTGCAAGAGGATGGTTGATGAAGAAGATCCACAGTTCCATGAGGAATACATGAATGAACAAGACCC CAGTATTCTCCACTTCCTGCTGGCATCAGGAGATGATGTTTCTAGCAAGCAACTCCGTGATGACTTGATGACAATGCTTATAGCTGGCCATGAAACATCT GCTGCAGTTTTAACATGGACCTTTTATCTTTTATCAAAGGAGCCAATAGTTATGTCCAAGCTCCAAAATGAGGTTGATTGTGTTCTAGGGGATCGATTTC CAACCATAGAAGACATGAAGAAACTAAAGTACACAACTCGAGTAATTAATGAATCATTGAGGCTCTATCCACAACCACCAGTCTTAATTCGTCGCTCTCT TGAGGGTGACATGCTCGGAAAGTACCCCATAGAAAGGGGTGAGGATATATTTATTTCGATCTGGAACCTCCACCGCAGTCCAAATCTTTGGGATGATGCA GATAAATTCATTCCTGATAGATGGCCTTTAGACGGGCCCAATCCAAATGAAACAAACCAAAATTTCTGCTATTTGCCCTTCGGTGGAGGACCACGGAAAT GCGTAGGTGACATGTTTGCTTCATTTGAGGCTGTAGTGGCCGTTTCCATGCTTGTTCGGAGATTTAACTTTCAAGTGGCACTTGGAGCACCACCGGTTGG AATGACAACAGGAGCAACAATTCACACAACAGAAGGGTTGAAGATGACAGTCACACGACGAACAAGACCTCCCATAATGCCAAAGCTGGAGAAGACAATG TTTGAAGTGGATGAATCAACTAGTGGTCCTGAAGGAGGGACCCAGCTGGGTCCGAAAAGTGAAGTTTCTTCTGCCAATTCCTGA
AA sequence Show only first row Show all	>Potri.013G088100.3 pacid=42810835 polypeptide=Potri.013G088100.3.p locus=Potri.013G088100 ID=Potri.013G088100.3.v4.1 annot-version=v4.1 MAANISLLNVPSSPSICVHKLQIPPIITSSSFPAIQYGGKYKFSSILACASSSNGREPESVDNGVKKVDKILEQKRRAELSARIASGEFTVQQSGFPSVL RNGLSKLGISNEILDFLFKWAVDLDKDYPKIPEAKGKISAIRSEPFFIPLYELYLTYGGIFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILAEILE FVMGKGLIPADGELWRVRRRAIVPSLHQKYVAAMISLFGEATDRLCKKLDAAAFYGEDVEMESLFSRLTLDIIGRAVFNYDFDSLTNDTGIVEAVYTVLR EAEDRSVAPIPIWEIPIWKDISPKQKKVAAALKLINDTLDDLIAICKRMVDEEDPQFHEEYMNEQDPSILHFLLASGDDVSSKQLRDDLMTMLIAGHETS AAVLTWTFYLLSKEPIVMSKLQNEVDCVLGDRFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLEGDMLGKYPIERGEDIFISIWNLHRSPNLWDDA DKFIPDRWPLDGPNPNETNQNFCYLPFGGGPRKCVGDMFASFEAVVAVSMLVRRFNFQVALGAPPVGMTTGATIHTTEGLKMTVTRRTRPPIMPKLEKTM FEVDESTSGPEGGTQLGPKSEVSSANS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Potri.013G088100 [exp]	0	1
AT5G20140			SOUL heme-binding family prote...		Potri.018G073501 [exp]	3.31	0.9793
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Potri.008G117200 [exp]	5.47	0.9780
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Potri.018G076600 [exp]	5.91	0.9749	Pt-HCF101.1
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.001G237800 [exp]	7.74	0.9751	ALB3.2
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.001G005900 [exp]	10.95	0.9736
AT5G58330			lactate/malate dehydrogenase f...		Potri.008G031700 [exp]	11.22	0.9729
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Potri.006G102100 [exp]	12.00	0.9729
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Potri.008G002900 [exp]	12.36	0.9712	SHMT2,SHM1.2
AT5G13720			Uncharacterised protein family...		Potri.009G057300 [exp]	12.40	0.9665
AT1G76570			Chlorophyll A-B binding family...		Potri.005G258600 [exp]	13.07	0.9650

Compare expression of checked genes

Potri.013G088100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.