Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XPO1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17020 1924 / 0 HIT2, ATXPO1, ATCRM1, XPO1A HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) AT3G03110 1836 / 0 CRM1B, XPO1B exportin 1B (.1) AT5G62600 48 / 4e-05 MOS14 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G052100 [exp] 2108 / 0 AT5G17020 1919 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Potri.012G073600 [exp] 54 / 6e-07 AT5G62600 1450 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Potri.015G068600 [exp] 47 / 6e-05 AT5G62600 1454 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038248 [exp] 1989 / 0 AT5G17020 1953 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10025853 [exp] 1957 / 0 AT5G17020 1914 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10020393 [exp] 1926 / 0 AT5G17020 1878 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10009572 [exp] 1902 / 0 AT5G17020 1860 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Lus10037671 [exp] 55 / 4e-07 AT1G72560 1433 / 0.0 PAUSED, ARM repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08767 [poplar] [flax] CRM1_C CRM1 C terminal
Representative CDS sequence Show only first row Show all	>Potri.013G088600.3 pacid=42811819 polypeptide=Potri.013G088600.3.p locus=Potri.013G088600 ID=Potri.013G088600.3.v4.1 annot-version=v4.1 ATGGCTTCTTTGGTTATGGCGGCAGAGAAATTTAGGGATTTAAGTCAGGCGATTGATGTTCCTTTACTGGATGCTACTGTAGCTGCCTTCTATGGCACTG GATCCAAAGAAGAGAGGGTAGCTGCTGACCGTATTTTGCAGGACTTGCAAAACAATCCAGATATGTGGCTCCAAGTGGTGCACATTCTACAAAATACAAA GAACCTCAACACCAAGTTCTTTGCCTTGCAGGTCCTAGAGGGCGTTATAAAGTATAGATGGAATGCATTGCCTGTTGAACAACGAGATGGAATGAAAAAT TACATTTCTGAAGTCATTGTACAGCTTTCAAGTAATGAGGCCTCTTTTCGGATGGAAAGGCTATATGTAAACAAGCTCAATGTTACTTTGGTTCAGATAC TCAAGCATGAGTGGCCTGCTAGATGGCGAAGCTTTATCCCTGATCTTGTTGCTGCAGCAAAAACTAGTGAAACTATTTGTGAGAATTGCATGGTTATATT GAAACTTCTTAGTGAAGAAGTTTTTGATTTCTCACGAGGAGAGATGACTCAACAGAAGATCAAAGAGCTTAAACAATCATTAAACAGCGAGTTTCAACTC ATCCATGAGCTATGCTTGTATGTCTTGTCAGCTTCCCAAAGAACCGAGCTTATTCGAGCAACATTGTCCACCTTGCATGCTTTTCTTTCTTGGATTCCTT TGGGTTATATTTTTGAATCTCCCTTGCTTGAAACACTTCTGAAATTTTTTCCAATGCCATCTTATCGGAACCTTACCCTTCAGTGTTTGACAGAGGTTGC GGCTCTTAATTTTGGGGATTTCTATAACATACAGTATGTTAAGATGTATAATTTTTTCATGGTCCAGTTGCAGGCCATTCTTCCACTAACCACTAATATC CCAGAGGCTTATGCAAATGGATCTAGTGAAGAACAAGCATTCATTCAGAATCTGGCGCTGTTTTTCACCTCGTTTTATAAGTCTCATATTCAAGTGCTGG AGTCTACGCAGGAGAACATAACTGCTCTGCTAATGGGTCTCGAGTATCTAATTAACATCTGTTATGTTGATGACACAGAGGTTTTTAAGGTTTGCTTGGA CTATTGGAACTCCTTGGTTTTGGAGCTTTTCGAGGCACGCCATAATTTGGACAACCCTGCAGTGGCTGTAAACATGATGGGACTGCAGGTAATGCCTTTG CTACATGGCATGGTTGATGGTTTAGGGTCACAAATTCTGCAGAGGAGGCAGCTTTATGCTACTCCAATGTCCAAGTTGCGAATGCTTATGATCTGTCGTA TGGCTAAACCTGAGGAGGTTTTGATAGTTGAAGATGAAAATGGTAATATTGTTCGTGAAACCATGAAGGATAATGATGTTCTTGTTCAATATAAGATTAT GAGGGAAACACTAATCTATTTGTCACATCTTGATCACGAGGATACTGAAAAGCAGATGCTGAAGAAATTAAGTAAACAACTGAGTGGTGAAGATTGGAAT TGGAACAATTTGAATACTTTATGCTGGGCAATTGGATCCATATCTGGTTCCATGATGGAAGAACAGGAAAACAGATTTCTAGTGATGGTCATTCGTGATC TACTGAATTTATGTGAAATCACGAAAGGGAAAGATAACAAGGCTGTTATTGCAAGTAACATCATGTATGTTGTTGGTCAGTACCCAAGATTTCTCAGAGC TCACTGGAAGTTCTTGAAAACTGTTGTCAATAAATTGTTTGAATTTATGCATGAAACTCATCCTGGAGTGCAGGACATGGCTTGTGACACATTCTTGAAA ATTGTACAGAAATGCAAGCGGAAATTTGTTATTGTACAGGTTGGAGAAAGTGAGCCGTTTGTATCTGAACTTCTAGCAGGCCTACCAACAACTGTTGCTG ATCTTGAGCCACATCAGATTCATACATTTTATGAATCTGTTGGCCATATGATTCAAGCAGAATCTGATCCACAGAAGAGAGATGAATACCTGCAGAGGTT GATGGATCTTCCTAACCAGAAATGGGCTGAAATTATCGGGCAGGCACGTCAAAGTGTAGATTTTCTGAAGGATCAAGATGTGATCAGAACTGTCCTTAAT ATAATGCAGACCAATACAAGTGTTGCAAGTGCCCTTGGGACATACTTTTTATCCCAAATTTCTCTAATCTTTTTGGACATGCTTAACGTATACAGAATGT ATAGTGAGCTTATATCAAGCAGTATTGCAGAAGGAGGGCCTTATGCATCTAAAACATCTTATGTGAAACTTTTGCGATCTGTTAAGAGGGAGACACTTAA GCTCATTGAGACATTTTTGGACAAGGCCGAAGACCAGACACAAATTGGGAAGCAGTTCGTGCCCCCAATGATGGATCCTGTTCTTGGTGATTATGCTAGG AATTTGCCTGATGCTAGAGAATCAGAAGTTTTGTCACTTTTTGCAACAATTATAAACAAGTACAAAGCTGCAATGATAGAAGATGTACCTAGAATATTTG AAGCTGTTTTCCAGTGTACGTTGGAGATGATAACCAAAAATTTTGAAGATTATCCAGAACATCGCCTTAAGTTCTTCTCATTACTCCGTGCCATTGCTAC ACATTGTTTCCCTGCCTTGATTCGTTTGTCAAGTGAGCAACTGAAGTTAGTGATGGATTCAATCATATGGGCATTCCGTCATACAGAGAGGAACATAGCT GAGACTGGTCTAAACCTATTGGTGGAGATGCTGAAGAACTTTCAGGCTTCAGAGTTCTGTAATCAGTTCTACAGGTCATACTTTTTGACAATTGAGCAGG AAATATTTGCTGTCTTGACAGATACATTTCACAAACCTGGTTTTAAGTTGCATGTCTTGGTGCTGCAACACTTGTTTTGCTTGGTCGAGAGTGGTGCTTT GACAGAGCCTCTGTGGGATGCTGCAACAATCTCTTATTCATACCCAAATAATGCAATGTTTGTTCGTGAGTATACCATTAAACTTCTGGGTACATCATTC CCAAACATGACTGCATCAGAGGTCACTCAATTTGTTAATGGACTATTTGAGTCAAGAAACGACCTGTCTGCATTTAAGAATCACATCCGAGACTTTCTCG TGCAATCAAAGGAATTCTCCGCTCAGGATAATAAAGATCTCTACGCTGAAGAGGCTGCTGCTCAGAGGGAAAGAGAGCGACAAAGAATGCTTTCCATTCC AGGGCTTATTGCCCCTAATGAAATACAAGATGAGATGTTAGATTCATAG
AA sequence Show only first row Show all	>Potri.013G088600.3 pacid=42811819 polypeptide=Potri.013G088600.3.p locus=Potri.013G088600 ID=Potri.013G088600.3.v4.1 annot-version=v4.1 MASLVMAAEKFRDLSQAIDVPLLDATVAAFYGTGSKEERVAADRILQDLQNNPDMWLQVVHILQNTKNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKN YISEVIVQLSSNEASFRMERLYVNKLNVTLVQILKHEWPARWRSFIPDLVAAAKTSETICENCMVILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQL IHELCLYVLSASQRTELIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPMPSYRNLTLQCLTEVAALNFGDFYNIQYVKMYNFFMVQLQAILPLTTNI PEAYANGSSEEQAFIQNLALFFTSFYKSHIQVLESTQENITALLMGLEYLINICYVDDTEVFKVCLDYWNSLVLELFEARHNLDNPAVAVNMMGLQVMPL LHGMVDGLGSQILQRRQLYATPMSKLRMLMICRMAKPEEVLIVEDENGNIVRETMKDNDVLVQYKIMRETLIYLSHLDHEDTEKQMLKKLSKQLSGEDWN WNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLK IVQKCKRKFVIVQVGESEPFVSELLAGLPTTVADLEPHQIHTFYESVGHMIQAESDPQKRDEYLQRLMDLPNQKWAEIIGQARQSVDFLKDQDVIRTVLN IMQTNTSVASALGTYFLSQISLIFLDMLNVYRMYSELISSSIAEGGPYASKTSYVKLLRSVKRETLKLIETFLDKAEDQTQIGKQFVPPMMDPVLGDYAR NLPDARESEVLSLFATIINKYKAAMIEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALIRLSSEQLKLVMDSIIWAFRHTERNIA ETGLNLLVEMLKNFQASEFCNQFYRSYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLVESGALTEPLWDAATISYSYPNNAMFVREYTIKLLGTSF PNMTASEVTQFVNGLFESRNDLSAFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMLDS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.013G088600 [exp]	0	1	XPO1.2
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.011G043100 [exp]	1.73	0.7961	Pt-ATMRP12.3
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	15.55	0.8086
AT4G20910		CRM2, HEN1	HUA ENHANCER 1, CORYMBOSA 2, d...		Potri.011G163600 [exp]	16.30	0.7732
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.011G120000 [exp]	21.21	0.7390	NTR1.4
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.014G083401 [exp]	22.44	0.7271
AT5G24970			Protein kinase superfamily pro...		Potri.018G014000 [exp]	22.71	0.7440
AT3G50430			unknown protein		Potri.005G133500 [exp]	23.87	0.7784
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.001G079450 [exp]	26.32	0.7676
					Potri.012G030301 [exp]	27.38	0.7847
AT5G36930			Disease resistance protein (TI...		Potri.001G028750 [exp]	28.46	0.6971

Compare expression of checked genes

Potri.013G088600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.