Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17060 370 / 8e-133 ATARFB1B ADP-ribosylation factor B1B (.1) AT3G03120 369 / 1e-132 ATARFB1C ADP-ribosylation factor B1C (.1) AT1G70490 239 / 4e-81 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT1G10630 239 / 4e-81 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G23490 239 / 4e-81 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT3G62290 238 / 9e-81 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT2G47170 238 / 1e-80 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT5G14670 238 / 2e-80 ATARFA1B ADP-ribosylation factor A1B (.1) AT2G24765 223 / 4e-75 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT2G15310 215 / 1e-71 ATARFB1A ADP-ribosylation factor B1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G052200 [exp] 395 / 7e-143 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Potri.014G116500 [exp] 239 / 4e-81 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 239 / 4e-81 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 239 / 4e-81 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007300 [exp] 239 / 4e-81 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005600 [exp] 239 / 4e-81 AT1G10630 374 / 7e-135 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 239 / 5e-81 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.008G100000 [exp] 238 / 5e-81 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.010G152600 [exp] 238 / 5e-81 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009571 [exp] 385 / 6e-139 AT5G17060 365 / 4e-131 ADP-ribosylation factor B1B (.1) Lus10020392 [exp] 383 / 6e-138 AT5G17060 363 / 3e-130 ADP-ribosylation factor B1B (.1) Lus10038245 [exp] 342 / 4e-122 AT5G17060 320 / 2e-113 ADP-ribosylation factor B1B (.1) Lus10030884 [exp] 243 / 1e-82 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 240 / 5e-81 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10031436 [exp] 238 / 1e-80 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10013021 [exp] 239 / 8e-80 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10029144 [exp] 238 / 3e-77 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1) Lus10030605 [exp] 240 / 9e-74 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10002817 [exp] 214 / 2e-71 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF08477 [poplar] [flax] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Potri.013G088800.3 pacid=42811647 polypeptide=Potri.013G088800.3.p locus=Potri.013G088800 ID=Potri.013G088800.3.v4.1 annot-version=v4.1 ATGGGTCAAGCCTTTCGCAAGCTTTTCGACACCTTCTTTGGCAACACCGAGATGCGGGTTGTGATGCTGGGACTTGATGCAGCTGGTAAAACTACCATAC TTTACAAGTTGCACATTGGAGAAGTATTATCTACTGTCCCTACCATTGGGTTCAATGTGGAGAAAGTTCAGTACAAGAATGTGGTATTCACCGTTTGGGA TGTTGGTGGACAAGAGAAATTAAGGCCGCTCTGGAGGCATTACTTCAATAACACTGATGGACTGATATATGTTGTTGATTCATTGGACCGAGAGAGAATC GGAAAAGCAAAGGCAGAATTTCAGACCATCATCAAAGATCCATTTATGCTCAACAGTGTCATCTTGGTGTTTGCCAACAAACAGGACATGAAAGGAGCAA TGACCCCAATGGAAGTATGTGAAGGACTAGGTCTTTTTGAACTCAAGAACAGAAAATGGCACATACAAGGGACTTGTGCTCTCAGAGGAGATGGACTTTA TGAGGGCTTGGACTGGTTATCTGGAACTTTAAAAGAGATGAGAGCTGCAGGATACTCTTCAGTGGGCACCTCATCATTCTAA
AA sequence Show only first row Show all	>Potri.013G088800.3 pacid=42811647 polypeptide=Potri.013G088800.3.p locus=Potri.013G088800 ID=Potri.013G088800.3.v4.1 annot-version=v4.1 MGQAFRKLFDTFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVVFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERI GKAKAEFQTIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFELKNRKWHIQGTCALRGDGLYEGLDWLSGTLKEMRAAGYSSVGTSSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Potri.013G088800 [exp]	0	1
AT4G38790			ER lumen protein retaining rec...		Potri.004G167400 [exp]	1.00	0.8828
AT3G23325			Splicing factor 3B subunit 5/R...		Potri.010G070500 [exp]	10.19	0.7915
AT1G60970			SNARE-like superfamily protein...		Potri.001G352900 [exp]	10.48	0.8065
AT5G21090			Leucine-rich repeat (LRR) fami...		Potri.009G018800 [exp]	11.48	0.6989
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.009G028200 [exp]	12.96	0.8453	Pt-ADF1.1
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.009G137800 [exp]	19.44	0.7816
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Potri.010G253500 [exp]	21.81	0.7234
AT4G32530			ATPase, F0/V0 complex, subunit...		Potri.006G248700 [exp]	23.81	0.8218
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.013G005600 [exp]	25.49	0.7787
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Potri.015G041700 [exp]	28.14	0.7361	PP2.5

Compare expression of checked genes

Potri.013G088800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.