Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54130 164 / 7e-42 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT3G14050 147 / 2e-36 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT4G02260 133 / 7e-32 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) AT3G17470 72 / 1e-12 ATCRSH Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G126700 [exp] 172 / 5e-44 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.001G168200 [exp] 161 / 6e-41 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1) Potri.003G066000 [exp] 161 / 7e-41 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.010G002400 [exp] 78 / 1e-14 AT3G17470 688 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002139 [exp] 1094 / 0 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1) Lus10008755 [exp] 341 / 9e-110 AT1G54130 72 / 1e-13 RELA/SPOT homolog 3 (.1) Lus10008756 [exp] 304 / 2e-96 AT4G02260 47 / 1e-05 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10022102 [exp] 165 / 4e-43 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1) Lus10001862 [exp] 164 / 1e-41 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1) Lus10037672 [exp] 157 / 2e-39 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1) Lus10015656 [exp] 156 / 4e-39 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1) Lus10003599 [exp] 124 / 1e-29 AT4G02260 643 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10028191 [exp] 74 / 3e-13 AT3G17470 671 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10042894 [exp] 72 / 8e-13 AT3G17470 350 / 6e-114 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [poplar] [flax] HD_PDEase PF01966 [poplar] [flax] HD HD domain CL0072 [poplar] [flax] Ubiquitin PF02824 [poplar] [flax] TGS TGS domain CL0260 [poplar] [flax] NTP_transf PF04607 [poplar] [flax] RelA_SpoT Region found in RelA / SpoT proteins
Representative CDS sequence Show only first row Show all	>Potri.013G089000.2 pacid=42811020 polypeptide=Potri.013G089000.2.p locus=Potri.013G089000 ID=Potri.013G089000.2.v4.1 annot-version=v4.1 ATGCCCATCATCTCTCCCTCTCCCTCATGCCAAACTCAAATCTCCACGATGTTCATCACCCTAAAAACGTCACCGTCTCTCTTTCACCGATACAGCCTCC ATTTCCGCTCCTCTAATTCCTCGAAATACAAATACCGCTGCCTTCTTGACCAAATTGCCCCCGTTTCCGCCAACGTCATCGCTGCCGCCGTCGCCTCCTC TGGTTCTGGCTACCTCCATGGTGCAGTTACCTCTGCAATAACTCACGTAGCTGTTACCGCCGTCGCTATTGCCTCCGGCGCTTGCCTTTCCACCAGGGTG GATTTTTTATGGCCCAAAGGAGAAGAACAACCTGGTTGTTTTATAGTGGACGGGGTTGATGTGACTGGGTACCCGATATTTAATGAGGCCAAGGTGGTTA AGGCTATTGCATTTGCTAAGAAAGCTCACCATGGCCAGTTTCGCAAAACTGGAGACCCTTATTTCACTCACTGTATCCATACTGCTAGAATCTTGGCTAT GTTGGTTCCATCTACTGGCAAACGAGCCATCGACACACTTGTTGCTGGGATTCTCCATGATGTGGTTGAAGATACAAGCGAGAGTTTACTCAGTATAGAA GAAAACTTTGGTGAGGATGTGGCAAAGTTAGTAGCTGGTGTTTCCAAAATTAGTTACATAAATCAGCTGCTAAGGAGACATCGTAGGCTAAATGTGAACC AGGGTACCCTCGGTCATGATGAGGCAAATAATTTACGAGTGATGCTCTTGGGCATGGTTAATGATCCACGTGTGGTGCTCATCAAGCTTGCAGATCGTCT TCACAACATGAGAACCATTTATGCCTTGCAACCTTCAAAGGCTCGAGCTGTAGCTGAAGAGACCTTGCTTATCTGGTGCTCACTTGCTTCCAGACTGGGT TTGTGGGCATTGAAAGCAGAGTTGGAAGATTTATGCTTTGCAGTTCTTCAGCCACAGCTATTTCAAAAAATGCGGGCTGACCTATCTTCCATGTGGAGCT CTAGCAATAGACCTGGATATCTGAGAAGAATTATAGCTTGGAATGAGAAAAATTCAACTCTTGGTTGTGAAAATTCTGTGACAATTGACAAAGATGTCTC GACCATGAAGGATCTTTTAGAAGCTGTAGTGCCTTTTGATATCTTGCTAGATCGAAGAAAACGGTCTAAATTTCTTAATGATCTTGGCCTAACATCAGAG ACTCAAACACGACCCAAGGTTGTGCAGGATGCTGGAATTGCTTTAGCATCTCTTGCTGTTTGCGAGGAAATGTTGGAGCGGGAGCTATTTATATCAACTT CTTATGTTCCTGGAATGGAAGTAACTTTATCTAGCAGACTGAAAAGCTTGTATAGCATCTATAGCAAGATGAAACGGAAAGATGTCAGCATCAATAAAGT ATATGATGCCCGTGCTTTGAGAGTGGTTGTTGGAGACAAAAATGGAACTTTACATGGACCTGCTATTCAATGTTGCTACAGTCTTCTTGACATTGTGCAT AGGCTTTGGACTCCAATAGATGGTGAACTTGATGATTACATTATTAATCCAAAGCCTAGTGGTTATCAGTCTCTACACACTGCAGTACAAGGTCCCGATA ATGCACCTTTGGAAGTCCAGATAAGAACACAGAAAATGCACGAGTATGCTGAACATGGACTTGCTGCCCACTGGCTTTACAAAGAAACTGGAAACACGTT GTCTTCCATTGGAAGCACTGATGAATCTGAAACTGAAGCATCTTCGTATCTTTCCAAAGATATTGATGATCAAACTTCCATGGAAGATGATCAGTTTCAA AAGTACAGATCCCTCAAAGCAGGACATCCTGTCCTTAGAGTGGAAAGAAGTCACTTACTTGCTGCTGTTATAATCAGAGTAGAAAAGGGTGGAAGAGAAT TGCTTGTTGCTGTTAGCTTTGGATTGGCAGCTTCTGAAGCAGTAGCTGATAGAAGATCTTCTTTTCAAATAAAGCAATGGGAAGCTTATGCAAGATTATA TAAGAAGGTATCTGACGAGTGGTGGTGTGAGCCAGGACATGGTGATTGGTGTACTTGCCTTGAAAAGTATACATTTTGTCGTGATGGTATGTACCACAAG CAAGATCAATTTGAGCGCCTATTGCCAACCTTCATCCAGGTTATTGATCTAATGGAAGAAGAAGAATCTGAATATAGAGCTGTTCTTTCTGCTGTTTTTG AGGGCAAGCCAGTTGATTCTATTGCATCTAGGCCAAACATAGACACTGTTGCTTCAACTTCTATGGAAGCTAGCATCAATAATAAGGTGCGTCTTTTAAG GACAATGCTTCAGTGGGAAGAGCAACTACGATATGAAGCAATTCTTGGGCAACCAAAGCATGAGCGGAAGTCTTATAGTAGTCTTGAATCCGGTGGCCTG GGGGAAGTGGTCATTGTATGTTGGCCTCATGGTGAAATAATCAGGTTAAGAAGTGGTAGCACTGCTGCAGATGCTGCAAGAAGAGTGGGATTTGACGGAA AGCTGGTTTTGGTTAATGGTCAGTTGGTATTACCCAATACAGAGCTCAAAGATGGTGATGTGGTTGAGGTCAGAGTTTAA
AA sequence Show only first row Show all	>Potri.013G089000.2 pacid=42811020 polypeptide=Potri.013G089000.2.p locus=Potri.013G089000 ID=Potri.013G089000.2.v4.1 annot-version=v4.1 MPIISPSPSCQTQISTMFITLKTSPSLFHRYSLHFRSSNSSKYKYRCLLDQIAPVSANVIAAAVASSGSGYLHGAVTSAITHVAVTAVAIASGACLSTRV DFLWPKGEEQPGCFIVDGVDVTGYPIFNEAKVVKAIAFAKKAHHGQFRKTGDPYFTHCIHTARILAMLVPSTGKRAIDTLVAGILHDVVEDTSESLLSIE ENFGEDVAKLVAGVSKISYINQLLRRHRRLNVNQGTLGHDEANNLRVMLLGMVNDPRVVLIKLADRLHNMRTIYALQPSKARAVAEETLLIWCSLASRLG LWALKAELEDLCFAVLQPQLFQKMRADLSSMWSSSNRPGYLRRIIAWNEKNSTLGCENSVTIDKDVSTMKDLLEAVVPFDILLDRRKRSKFLNDLGLTSE TQTRPKVVQDAGIALASLAVCEEMLERELFISTSYVPGMEVTLSSRLKSLYSIYSKMKRKDVSINKVYDARALRVVVGDKNGTLHGPAIQCCYSLLDIVH RLWTPIDGELDDYIINPKPSGYQSLHTAVQGPDNAPLEVQIRTQKMHEYAEHGLAAHWLYKETGNTLSSIGSTDESETEASSYLSKDIDDQTSMEDDQFQ KYRSLKAGHPVLRVERSHLLAAVIIRVEKGGRELLVAVSFGLAASEAVADRRSSFQIKQWEAYARLYKKVSDEWWCEPGHGDWCTCLEKYTFCRDGMYHK QDQFERLLPTFIQVIDLMEEEESEYRAVLSAVFEGKPVDSIASRPNIDTVASTSMEASINNKVRLLRTMLQWEEQLRYEAILGQPKHERKSYSSLESGGL GEVVIVCWPHGEIIRLRSGSTAADAARRVGFDGKLVLVNGQLVLPNTELKDGDVVEVRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.013G089000 [exp]	0	1
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104300 [exp]	2.00	0.9047
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.009G043100 [exp]	2.44	0.9125
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Potri.006G086200 [exp]	2.44	0.9168
AT2G39950			unknown protein		Potri.010G192800 [exp]	6.16	0.8708
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	9.79	0.8847
					Potri.007G054500 [exp]	10.39	0.8585
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	11.74	0.9090
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G351532 [exp]	12.32	0.8494
AT1G75730			unknown protein		Potri.002G022800 [exp]	13.07	0.8374
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Potri.017G116700 [exp]	15.71	0.8767

Compare expression of checked genes

Potri.013G089000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.