Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33350 640 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 379 / 4e-126 MEF21 mitochondrial editing factor 21 (.1) AT5G59200 378 / 1e-125 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G08510 354 / 8e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 357 / 3e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 353 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 343 / 2e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 338 / 2e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 339 / 4e-109 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 336 / 9e-108 SLO1 SLOW GROWTH 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035900 [exp] 390 / 3e-130 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.007G050200 [exp] 392 / 5e-130 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 376 / 1e-124 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G175900 [exp] 371 / 3e-123 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G239600 [exp] 369 / 7e-121 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 361 / 5e-118 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 361 / 9e-118 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 357 / 2e-116 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G141200 [exp] 354 / 2e-116 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027311 [exp] 761 / 0 AT1G33350 621 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 370 / 4e-123 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10005987 [exp] 369 / 9e-123 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 369 / 9e-121 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 359 / 4e-117 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 353 / 1e-114 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027389 [exp] 348 / 3e-114 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 345 / 3e-111 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 342 / 1e-110 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 343 / 2e-110 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.013G089400.2 pacid=42811143 polypeptide=Potri.013G089400.2.p locus=Potri.013G089400 ID=Potri.013G089400.2.v4.1 annot-version=v4.1 ATGCGTTCCCTCTATGTATTAAACCCAACAAATCTAAACCAACGAGTCTTATCAATAGTTTCAAAATGCAATCATCTCAATCACCTTAAACAACTCCAAT CCTTTTTGACAATCCTCGGTCACTCACAGACCAATTTCTACACTTTCAAACTGATTCGCTGTTGCCTTCTCCAACTCAACAACCTTTACTATGCTCGCTT CATTTTTAACAATTTCGAATTCCCCAACATCTACCTCTACACTGCTATGGTTACTGCTTATGCCTCTATACAAGACCATCAATCGTCTTTTGATTTGTTT CGTTTCATGCTTCGTAGAGGACACCCAAAACCAAACCATTTTTTGTTCCCTCATGTTTTGAAATATTGCCAAGTAACAAAATTTGTGCATGCCCAGATTG AGAAATTGGGTTTTGGACAATACCCAGTTGTGCAAACTGCCCTTATTGATTCTTACTCGAGGTCTGGTTATGATATTGGAATTGCGAGGCGGATGTTTGA CGAAATGTCTGAGAGAAATGTTGTTTCATGGACTGCTATGATTTCTGGGTATACCAGACTTGGGGAGATTGAGAATGCTATTACGCTTTTTGATGAAATG CCTGAGAGGGATGTTCCTTCTTGGAATGCTGTAATTTCGGGTTGTGCGCAAAATGGGTTGTTTACCAGGGCTATTACGATTTTTAAGAAGATGGTGGGTC TTTCCCTGGAGGTACAGCATCGAGACATGAGGCCTAATCAGACGACTGTTGTCTGTGCACTTTCTGCCTGTGGTCACACTGGGATGCTTCATGTTGGGAA ATGGATTCATGGTTATGTTTACAGGAATATGCGTAGTTCAGATTCGTTTGTGTTGAATGCTTTGGTGGATATGTATGGGAAATGTGGGTGTTTAAAAGAG GCAAAGAAGGTTTTTGACGCAACTTCAAAGAAAAGTTTGACATCTTGGAATTCAATGATTAATTGTTTAGCACTTCATGGACAAAGTGAGAGGGCTATTT GTGTGTTTGAGGAGATGTTGCATTATGTAGCCGATGTAAGACCAAATGAGATTACCTTTTTGGGGTTATTAAATGCTTGTACCCATGGAGGATTGGTTGA AAAGGGTCGTTTCTATTTCCAGATGATGACTCTAAATTACGGGATTGAACCTGAGATTGAGCATTATGGGTGCTTGATAGATATTCTTGGTCGAGCAGGA AGGTTGGAAGAAGCCTTGGAAGTTCTAAGGGAAATGAAGATTCAACCCGATGAGGTTGTTTGGGGCTCTTTGCTTAATGGATGTAAAATACATGGTCGTG CAGACTTGGCAGAGTTTGCAGTTAAAAAGCTGCTTGAAATTGATCCAAACAATGGAGGCTATGGTATAACGTTGGCAAATGTATATGGAAAGTTAGGGAA GTGGGATGATGTCCGCAGGGTGAGAAAGATGTTGAAGGAGCTAAATGTTCCTAAGACTCCAGGTTGCAGTTGGATTGAGGTTGATAACAAGGTTTCTCAG TTTCACTCTGTAGACAAATCACATCCCAGAGCAGAAGAAATTTACCAGATATTGGAAAATCTGGTTTACTTTAATTAG
AA sequence Show only first row Show all	>Potri.013G089400.2 pacid=42811143 polypeptide=Potri.013G089400.2.p locus=Potri.013G089400 ID=Potri.013G089400.2.v4.1 annot-version=v4.1 MRSLYVLNPTNLNQRVLSIVSKCNHLNHLKQLQSFLTILGHSQTNFYTFKLIRCCLLQLNNLYYARFIFNNFEFPNIYLYTAMVTAYASIQDHQSSFDLF RFMLRRGHPKPNHFLFPHVLKYCQVTKFVHAQIEKLGFGQYPVVQTALIDSYSRSGYDIGIARRMFDEMSERNVVSWTAMISGYTRLGEIENAITLFDEM PERDVPSWNAVISGCAQNGLFTRAITIFKKMVGLSLEVQHRDMRPNQTTVVCALSACGHTGMLHVGKWIHGYVYRNMRSSDSFVLNALVDMYGKCGCLKE AKKVFDATSKKSLTSWNSMINCLALHGQSERAICVFEEMLHYVADVRPNEITFLGLLNACTHGGLVEKGRFYFQMMTLNYGIEPEIEHYGCLIDILGRAG RLEEALEVLREMKIQPDEVVWGSLLNGCKIHGRADLAEFAVKKLLEIDPNNGGYGITLANVYGKLGKWDDVRRVRKMLKELNVPKTPGCSWIEVDNKVSQ FHSVDKSHPRAEEIYQILENLVYFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33350			Pentatricopeptide repeat (PPR)...		Potri.013G089400 [exp]	0	1
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083900 [exp]	1.73	0.9347
AT3G14730			Pentatricopeptide repeat (PPR)...		Potri.006G090900 [exp]	4.89	0.9253
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	7.07	0.9257
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.012G061300 [exp]	8.00	0.9005	ARP901,ARP4.2
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032312 [exp]	8.12	0.9079
AT3G11110			RING/U-box superfamily protein...		Potri.008G071000 [exp]	8.36	0.9038
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	8.66	0.9080
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Potri.009G103700 [exp]	10.58	0.8881
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	12.24	0.9002
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G084000 [exp]	14.00	0.9108

Compare expression of checked genes

Potri.013G089400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.