Plant FIBer expression Database

Potri.013G090000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26580 323 / 1e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT5G05200 118 / 1e-28 Protein kinase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G061300
[exp]
177 / 2e-49 AT5G05200 830 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036856
[exp]
321 / 2e-106 AT3G26580 368 / 9e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10006208
[exp]
214 / 3e-66 AT3G26580 283 / 7e-95 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10012865
[exp]
111 / 4e-26 AT5G05200 680 / 0.0 Protein kinase superfamily protein (.1)
Lus10030509
[exp]
106 / 2e-24 AT5G05200 796 / 0.0 Protein kinase superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.013G090000.3 pacid=42812763 polypeptide=Potri.013G090000.3.p locus=Potri.013G090000 ID=Potri.013G090000.3.v4.1 annot-version=v4.1
ATGGCAATCATTGCTGTTTCAGCGCCAAGAGGGGCTCGATTCTCTTGCTTTAATACTAACCCTCTTCCTCAGTTACCAATTCCAAGCAGGAGATCAAGTA
AGCTCAATTTTCGCTCAAAGGGTTTTACCCCTTTTGCCCGATATGCTCAAACACAGCAGGATCTTTTCTCTTCTCGTCTCCAAGATAGTATTGAAAACTT
GCCCAAACTGGTGGAGGATATTGTTCAGACATCTATCAACACCGGTCCACGGGGAGCCCTAAGGTTAGCTCAGGGCGTTCAAGCATTTCTTGGAGGTGGT
GGCGAATGGCTGGCAGATGTATCGAAGGATGTGGATGTCATGGCCTTTGCCAAAGACCTGGACAAGATATTTTCATCAATACAGGATTTGGATACTGAAT
TAATTGTTGCAACTGCCAGGGATACAACTACAAATGCAACCGCTGTATCTGCCAATGCAGTTGTTGATGAGAGGCAATTGAATGCACTTTTTCTTGATGT
GAAAGTTTCCGAAGTATTTGGTAAGGGTAATTACAAATACCTAGAATTGGATGGGGAAGCTCAATCTTGGAAAAACCAGAGAATGGTGGTAGCCCGAGGA
AAAGCGAATTCAGAAAGGAATGGTGTGGATTTTGACAGTGATGAAGAGAATGGGAATGGAGGAGGGGGAGGAGATCAGGAACCGTTTGATTGGGAAAAGG
AGATGAGGAAGAGAGTGAAGGAGATTGAAGAGAGGAGAGAGTTGGTGAAGAAAGCTGAGGAGTTGCAGAACAGAATATTTGATGATAATAGCCAAGAAGA
AAAAGAAGAGAGCGAGGAAGAGAAGAAGGAGAGAGTGAGAAAAGAGCTCGAAAAGGTGGCCATGGAACAGGCAGAGAGAAGAAAGACAGCTGAATTGATG
TTCGAATTAGGGCAAAAAGCTTATGGAAAAGGCATGTACGTAAGGGCTATTGAGTTTCTTGAAGCCTCACTTACGATCATTCCAAGGTCGACACTGTTTG
GTGGTGAGATACAAATATGGCTGGCTATGGCTTATGAGGCTAATAATCGACATGCTGACTGCATTGCTCTTTACAAGCAATTGGAAATGAAGCACCCTAG
TATTAGCATTCGACGTCAAGCTGCAAATCTTCGATATATATTGCAGGCACCTAAGCTTAAGATATCCCAGGAGGAGATGGTCACCATTCCACTCATTGGT
TCAACATATGACAGCTATGCGGCATCATGGAGTGATAAGTACAAGGAGAAGGATCAAGAGAGAAGTTGGACAACATCCAATCAATTGCCATCATCTAGAG
ATTTTATGGGGGACTTTCTGGTCTGGCGACCTCCAACTGGACTGGAGAAAAATCGAGCTTTTTGGTTTGCTTTAGCTTTGTGGATGGGATTGGTTGGAGT
TGCCCTTTTTCTACAAAGATGA
AA sequence
>Potri.013G090000.3 pacid=42812763 polypeptide=Potri.013G090000.3.p locus=Potri.013G090000 ID=Potri.013G090000.3.v4.1 annot-version=v4.1
MAIIAVSAPRGARFSCFNTNPLPQLPIPSRRSSKLNFRSKGFTPFARYAQTQQDLFSSRLQDSIENLPKLVEDIVQTSINTGPRGALRLAQGVQAFLGGG
GEWLADVSKDVDVMAFAKDLDKIFSSIQDLDTELIVATARDTTTNATAVSANAVVDERQLNALFLDVKVSEVFGKGNYKYLELDGEAQSWKNQRMVVARG
KANSERNGVDFDSDEENGNGGGGGDQEPFDWEKEMRKRVKEIEERRELVKKAEELQNRIFDDNSQEEKEESEEEKKERVRKELEKVAMEQAERRKTAELM
FELGQKAYGKGMYVRAIEFLEASLTIIPRSTLFGGEIQIWLAMAYEANNRHADCIALYKQLEMKHPSISIRRQAANLRYILQAPKLKISQEEMVTIPLIG
STYDSYAASWSDKYKEKDQERSWTTSNQLPSSRDFMGDFLVWRPPTGLEKNRAFWFALALWMGLVGVALFLQR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26580 Tetratricopeptide repeat (TPR)... Potri.013G090000
[exp]
0 1
AT1G07040 unknown protein Potri.008G194800
[exp]
1.41 0.9644
AT2G23840 HNH endonuclease (.1) Potri.013G059500
[exp]
2.00 0.9660
AT3G16510 Calcium-dependent lipid-bindin... Potri.001G070400
[exp]
4.00 0.9297
AT5G42750 BKI1 BRI1 kinase inhibitor 1 (.1) Potri.002G127100
[exp]
5.47 0.9498
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.019G057901
[exp]
5.65 0.9530
AT5G19540 unknown protein Potri.018G080900
[exp]
5.83 0.9167
AT5G23240 DNAJ heat shock N-terminal dom... Potri.007G072600
[exp]
6.32 0.9503
AT5G49760 Leucine-rich repeat protein ki... Potri.004G231200
[exp]
7.41 0.9260
AT1G69040 ACR4 ACT domain repeat 4 (.1.2) Potri.012G102200
[exp]
7.74 0.9263
AT1G67910 unknown protein Potri.018G079200
[exp]
7.93 0.9290

Potri.013G090000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.