Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-WRKY54.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56400 171 / 2e-51 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G40750 142 / 1e-39 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT5G22570 96 / 1e-22 WRKY ATWRKY38, WRKY38 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY DNA-binding protein 38 (.1) AT2G46400 93 / 2e-21 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT5G01900 91 / 3e-21 WRKY ATWRKY62, WRKY62 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) AT1G66550 90 / 9e-21 WRKY ATWRKY67, WRKY67 WRKY DNA-binding protein 67 (.1.2) AT5G24110 87 / 2e-19 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT2G40740 84 / 2e-18 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT4G11070 84 / 4e-18 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT1G66560 81 / 2e-17 WRKY ATWRKY64, WRKY64 WRKY DNA-binding protein 64 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G109100 [exp] 192 / 7e-59 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.016G137900 [exp] 179 / 8e-54 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.012G031700 [exp] 112 / 5e-28 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.003G138600 [exp] 107 / 1e-26 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.002G168700 [exp] 105 / 9e-26 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.001G092900 [exp] 103 / 4e-25 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.014G096200 [exp] 99 / 2e-23 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.013G090400 [exp] 77 / 8e-16 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.019G059300 [exp] 74 / 1e-14 AT2G40740 168 / 2e-49 WRKY DNA-binding protein 55 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034244 [exp] 198 / 1e-61 AT3G56400 151 / 6e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029021 [exp] 192 / 2e-59 AT3G56400 149 / 3e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10030517 [exp] 159 / 3e-46 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10012870 [exp] 154 / 2e-44 AT3G56400 153 / 1e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025216 [exp] 132 / 6e-36 AT3G56400 123 / 8e-33 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10025133 [exp] 127 / 3e-34 AT3G56400 114 / 2e-29 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10014177 [exp] 116 / 4e-30 AT3G56400 105 / 3e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10022736 [exp] 104 / 9e-26 AT5G01900 105 / 1e-26 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 62, WRKY DNA-binding protein 62 (.1) Lus10001902 [exp] 102 / 9e-25 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10003894 [exp] 93 / 3e-21 AT4G11070 196 / 1e-60 WRKY family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.013G090300.1 pacid=42812074 polypeptide=Potri.013G090300.1.p locus=Potri.013G090300 ID=Potri.013G090300.1.v4.1 annot-version=v4.1 ATGGGCACTTGTTTGAGTGAAAAACTATCATCAAGCAGGGAAAGGGTGATAAAAGAACTTGTTCGAGGCCATGAATTTGCAGCCCAACTTCAAATTCGCC TCCAGAAACCTTGTGGAAATTTTGATGGGCGTTTTTCTTCAGCGGGTGAGCTTGTAGGGAAGATCTTAAGATCTTTTTCTGAGACTCTTTCTGTCATTAC TTCTAGTGAATCTGCAGGTGGTGAGATTTGTCAAAATCTAGCAAGTTCACTAGGAGACTCTGCGTGTTATGATGACCGGAGGTCTGAAGATTCCGGCGAG AGCAAGAAGAGGCCGGCTACCACCAAGGATAGGAGAGGTTGTTACAAGAGAAAAAAGATTTCCCAATCATGGACTACAGTCTGTCCTACGATTGAAGACA GTCATGCATGGAGAAAATATGGGCAGAAGGGGATCTTGAATGCTAAATACCCAAGGAGTTACTTTAGGTGTTCTCGCAAGTATGAACAAGGTTGCAAGGC AACAAAACAAGTCCAAAGAATGGAAGACAACCCAGACTTGTACCATACCACATACATTGGCAGCCATACATGCAGAAACATCCCTGAGGCTCCACAAATC ATCACAGATTCTGATCCCTGGGAATCTTACAATCTTACGAGTAGTGTGATCAGTTCTCATTCAAAGATTCCTAGATATGAAGAACAAGATCATCATCCCA TTATGGGGTCACCCTGTGAAGTAGAGCAAGAATCTAAGGAAGATCAGACACCAAGTGGTCTAGCAGACAATGTTTCGTCTTTAGATTCATTCATGTGGAA GGATCTCATACCATTTGAAGAACCAGTGGATGAGCCTTCCATGATATTGAGGTCTGATTATGAGGCAGTGGATTCTATACACTTGTTCTCATGTACAGAG GTCACCTCTCAAAGTTTGGACATGGATTTTGTCGTCAAGTCTTTTGATTTTGACTGTGATTTTCATTTTGATTAG
AA sequence Show only first row Show all	>Potri.013G090300.1 pacid=42812074 polypeptide=Potri.013G090300.1.p locus=Potri.013G090300 ID=Potri.013G090300.1.v4.1 annot-version=v4.1 MGTCLSEKLSSSRERVIKELVRGHEFAAQLQIRLQKPCGNFDGRFSSAGELVGKILRSFSETLSVITSSESAGGEICQNLASSLGDSACYDDRRSEDSGE SKKRPATTKDRRGCYKRKKISQSWTTVCPTIEDSHAWRKYGQKGILNAKYPRSYFRCSRKYEQGCKATKQVQRMEDNPDLYHTTYIGSHTCRNIPEAPQI ITDSDPWESYNLTSSVISSHSKIPRYEEQDHHPIMGSPCEVEQESKEDQTPSGLADNVSSLDSFMWKDLIPFEEPVDEPSMILRSDYEAVDSIHLFSCTE VTSQSLDMDFVVKSFDFDCDFHFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.013G090300 [exp]	0	1	Pt-WRKY54.1
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.007G079800 [exp]	3.16	0.8401
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.005G085200 [exp]	5.74	0.8388	WRKY51.1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G109100 [exp]	8.48	0.8268
AT4G35840			RING/U-box superfamily protein...		Potri.005G244800 [exp]	13.03	0.8264
					Potri.012G121504 [exp]	14.73	0.8211
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019700 [exp]	16.43	0.8257
					Potri.010G125900 [exp]	17.14	0.7679
AT2G04515			unknown protein		Potri.014G166900 [exp]	18.97	0.7460
					Potri.012G014800 [exp]	21.02	0.7999
					Potri.012G124788 [exp]	25.21	0.8009

Compare expression of checked genes

Potri.013G090300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.